Facilities
DNA Sequencing Facility Home
Submitting DNA Samples for Sequencing
DNA Sequencing Order Form (.pdf)
Viewing Sequence Data from Your Computer
Universal Primers We Provide
FAQ
Possible Reasons for Failed Sequencing
Estimating Concentrations of DNA Templates Using Gel Electrophoresis
The Effect of TE Buffer on DNA Sequencing Reactions
Bacterial Host Strains for DNA Template Preparation
Sequencing Primer ng/pmol Conversion Table
Submitting DNA Samples for Sequencing

To further improve the quality of DNA Sequencing at our facility, a new sample submission procedure will be instituted that requires less DNA and a smaller sample volume. To ensure reproducible success in sequencing, we recommend that DNA samples be prepared using a Qiagen kit, resuspended in ddH2O (not buffer), and examined/quantified by spectrophotometry and agarose gel electrophoresis.

Other important procedures for sample submission are described below:

  1. Label the 1.5ml sample tube on the side (not on the cap).
  2. If you want your sample to be sequenced with one of our universal primers, please provide the DNA template in a volume of 12 µl. If you provide your own primer, the DNA template plus your own primer should be provided in a total volume of 16 µl. See the table below for the amounts of template and primer needed for various template types and lengths.
  3. The sequencing lab can provide the following universal primers: SP6, T3, T7, T7 terminator, M13 forward, M13 reverse.
  4. When you bring samples to the sequencing lab, fill in a Sequencing Order Form. Your DNA and primer name combined should comprise a total of 9 characters or less. To indicate the universal primer that should be used for sequencing, please color-code your samples by placing a color-coded label (provided at the sequencing lab) on the cap of each 1.5ml tube. Assign yourself the job number that follows the previous customer’s number, and write it on the cap of each tube.

Table: DNA and primer amount needed for sequencing

DNA Type DNA Amount Primer amount
Double-stranded 50ng for each kb 5pmol
PCR products 3ng for each 100bp 5pmol
BAC, cosmid 500-1000ng 10pmol
Single-stranded 50-100ng 5pmol

We recommend that customers estimate DNA concentrations by comparison to a standard, using gel electrophoresis.

Color-Coding for Universal Primers

Sp6 Red
T3 Light Blue
T7 Blue
T7 terminator Yellow
M13F Green
M13R Orange
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