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Electron Microscopy Lab
CM200 Magnification Calibration
Magnification Table prepared by Andrea Nans (04/2007) after objective lens change.
Calibrations correspond to Angstrom/pixel for 1kx1k Gatan 794 CCD camera. Purple values were obtained using negatively stained catalase crystals and yellow values were obtained using a square diffraction grating.
Magnification Table prepared by Wanzhong He (11/13/2001) Calibrations correspond to Angstrom/pixel for 1kx1k Gatan 794 CCD camera
| Mode |
MAG |
FINAL |
|
GOLD |
|
SCALE |
G-CALC. |
ROT |
GR/Si |
|
LHC |
|
| LM |
25 |
7529.04 |
GRS |
7536.09 |
GS |
1.271 |
7176 |
-3 |
7529.04 |
GRS |
|
|
| LM |
33 |
5923.06 |
GRS |
5928.6 |
GS |
1.323 |
5436 |
0 |
5923.06 |
GRS |
|
|
| LM |
43 |
4476.23 |
GRS |
4480.42 |
GS |
1.397 |
4172 |
-2 |
4476.23 |
GRS |
|
|
| LM |
57 |
3203.91 |
GRS |
3207.17 |
GS |
1.314 |
3147 |
145 |
3203.91 |
GRS |
|
|
| LM |
75 |
2438.84 |
GRS |
2441.53 |
GS |
1.306 |
2392 |
140 |
2438.84 |
GRS |
|
|
| LM |
100 |
1866.84 |
GRS |
1868.74 |
GS |
1.285 |
1794 |
141 |
1866.84 |
GRS |
|
|
| LM |
130 |
1453.36 |
GR |
1454.84 |
GS |
1.351 |
1380 |
133 |
1453.36 |
GR |
|
|
| LM |
170 |
1069.01 |
GR |
1077.26 |
GS |
1.263 |
1055.29 |
115 |
1069.01 |
GR |
|
|
| LM |
220 |
850.41 |
GR |
852.91 |
GS |
1.372 |
815.45 |
113 |
850.41 |
GR |
|
|
| LM |
290 |
631.52 |
GR |
630.01 |
GS |
1.325 |
618.62 |
93 |
631.52 |
GR |
|
|
| LM |
380 |
472.95 |
GR |
475.33 |
GS |
1.346 |
472.1 |
71 |
472.95 |
GR |
|
|
| LM |
500 |
356.87 |
GR |
353.15 |
GS |
1.297 |
358.8 |
44 |
356.87 |
GR |
|
|
| LM |
660 |
274.25 |
GR |
272.3 |
GS |
1.294 |
283.33 |
45 |
274.25 |
GR |
|
|
| LM |
870 |
213.22 |
GR |
210.42 |
GS |
1.317 |
206.21 |
48 |
213.22 |
GR |
|
|
| LM |
1150 |
161.71 |
GR |
159.76 |
GS |
1.283 |
162.6 |
37 |
161.71 |
GR |
|
|
| LM |
1500 |
126.07 |
GR |
124.49 |
GS |
1.054 |
119.6 |
27 |
126.07 |
GR |
|
|
| M |
1500 |
120.15 |
GR |
118.29 |
GS |
1.31 |
119.6 |
-35 |
120.15 |
GR |
119.5 |
LHCS |
| M |
2000 |
90.91 |
GR |
90.29 |
GS |
1.358 |
89.7 |
-42 |
90.91 |
GR |
90.57 |
LHCS |
| M |
2750 |
67.31 |
GR |
66.47 |
GS |
1.367 |
65.24 |
-56 |
67.31 |
GR |
67.32 |
LHCS |
| SA |
3800 |
48.62 |
GS |
48.62 |
GS |
1.348 |
47.21 |
-75 |
49.47 |
GR |
48.88 |
LHC |
| SA |
5000 |
36.07 |
GS |
36.07 |
GS |
1.342 |
35.88 |
-94 |
36.89 |
GR |
36.3 |
LHC |
| SA |
6600 |
26.87 |
GS |
26.87 |
GS |
1.333 |
27.18 |
-77 |
27.58 |
GR |
27.12 |
LHC |
| SA |
8800 |
20.14 |
GS |
20.14 |
GS |
1.285 |
22.42 |
-74 |
20.93 |
GR |
20.52 |
LHC |
| SA |
11500 |
15.67 |
GS |
15.67 |
GS |
1.309 |
15.6 |
-74 |
16.21 |
GR |
16.028 |
LHC |
| SA |
15000 |
11.97 |
GS |
11.97 |
GS |
1.343 |
11.96 |
-81 |
|
|
12.266 |
LHC |
| SA |
20000 |
8.914 |
GS |
8.914 |
GS |
1.359 |
8.97 |
-92 |
|
|
9.322 |
LHC |
| SA |
27500 |
6.544 |
GS |
6.544 |
GS |
1.409 |
6.52 |
-118 |
|
|
6.94 |
LHC |
| SA |
38000 |
4.654 |
GS |
4.654 |
GS |
1.281 |
4.72 |
69 |
|
|
4.886 |
LHC |
| SA |
50000 |
3.633 |
GS |
3.633 |
GS |
1.33 |
3.59 |
66 |
|
|
3.811 |
LHC |
| SA |
66000 |
2.731 |
GS |
2.731 |
GS |
1.332 |
2.72 |
56 |
|
|
|
|
| SA |
88000 |
2.05 |
GS |
2.05 |
GS |
1.333 |
2.04 |
37 |
|
|
|
|
| SA |
115000 |
1.523 |
Si |
1.538 |
GS |
1.316 |
1.56 |
31 |
1.523 |
Si |
|
|
| SA |
150000 |
1.157 |
Si |
1.17 |
GS |
1.296 |
1.2 |
17 |
1.157 |
Si |
|
|
| SA |
200000 |
0.902 |
Si |
0.894 |
G |
1.254 |
0.9 |
-2 |
0.902 |
Si |
|
|
| SA |
250000 |
0.72 |
G |
0.72 |
G |
|
0.72 |
-25 |
0.731 |
Si |
|
|
| SA |
310000 |
0.567 |
G |
0.567 |
G |
|
0.58 |
-41 |
0.581 |
Si |
|
|
| SA |
390000 |
0.46 |
G |
0.46 |
G |
|
0.46 |
-78 |
0.462 |
Si |
|
|
| M |
540000 |
0.334 |
G |
0.334 |
G |
|
0.33 |
-98 |
0.335 |
Si |
|
|
| M |
750000 |
0.247 |
G |
0.247 |
G |
|
0.24 |
-150 |
0.245 |
Si |
|
|
Notes:
1) 3800 - 390000 SA mode; 2750 - 1500 M ; 1500 - 25 LM;
2) G means calibrated with gold rings(0.236nm,0.204nm,0.144nm)
3) GS means using higher magnification gold ring
calibrated
image's distance
between two seperated small gold particles
along the
diagonal(about 1200pixel) as a SCALE.
4) G-CALC. calculated results from 390KX gold calibrated result with
fomula:
G-CALC
= (390000*0.46)/current_magnifcication
5) LHC LHC lattice calibrated (a=12.95nm; a*=1/112.15029A-1/)
6) LHCS means using higher magnification LHC lattice calibrated
image's distance
between two seperated small features
along the
diagonal(about 1200pixel) as a scale.
7) GR calibrated with Diffraction Grating Replica
Cat#203(2160lines/mm).
8) GRS means using higher magnification GR calibrated.
mage's distance
between two seperated small gold particles
long the diagonal(about
1200pixel) as a scale.
9) Si Calibrated with Si(111) lattice (d=0.3135428nm).
10) C3 different GS or L calibrated results
11) ROT rotating angle from CCD's Y-Axis to tilt_axis(degree)
for
different
magnification(clockwise postive).
12) SCALE measured the distances between two fiducial marks along
the
diagonal for
adjacent Magnifications,then calculates the SCALE:
SCALE = D_Hi_Mag/D_Lo_Mag
e.g.: D_Mag_6600
= 1374.64 pixel, D_Mag_5000 = 1033.44 pixel,
SCALE
= 1374.64/1033.44 = 1.330 (close to 6600/5000=1.32).
13)FINAL final calibration results(balanced for different
calibrating
samples and
for different magnifications).
LHC results indicate shrinkage of LHC lattice in negative stain between
0.5 and 5%
Calibration by Bill Rice (10/99)
used LHC crystals assuming 129.5 A lattice
pictures on film - optical diffraction using 14.5 mm reciprocal spacing
for 0.1 mm real spacing
50,000 -> 52,100
First Calibration by Peijun Zhang (~1997)
Md, On Scope
(Main screen down) |
Mu, On Scope/film
(Main screen up) |
MCCD, On CCD
(Main screen up) |
Mfilm
(Read from films) |
MCCD/Mu |
Mfilm/Mu |
| 17.5k |
20.0k |
27,922 |
21,047 |
1.40 |
1.05 |
| 24.5k |
27.5k |
37,157 |
28,618 |
1.35 |
1.04 |
| 34.0k |
38.0k |
51,352 |
38,610 |
1.35 |
1.02 |
| 44.0k |
50.0k |
66,278 |
49,489(51.3k*) |
1.33 |
0.99 |
| 58.0k |
66.0k |
87,813 |
65,767
(68.6k*) |
1.33 |
1.00 |
| 78.0k |
88.0k |
115,335 |
88,688 |
1.31 |
1.01 |
| 100k |
115k |
156,841 |
120k* |
1.36 |
1.04 |
| 135k |
150k |
206,070 |
N/A |
1.37 |
N/A |
| 175k |
200k |
266,586 |
N/A |
1.33 |
N/A |
| 220k |
250k |
312,085 |
N/A |
1.25 |
N/A |
| 275k |
310k |
406,012 |
318,187 |
1.31 |
1.03 |
| 350k |
390k |
509,531(543.8k*
) |
402,159 |
1.31 |
1.03 |
| 480k |
540k |
700,157(772.1k*
) |
564,871 |
1.30 |
1.05 |
| 660k |
750k |
962,432 |
755,282 |
1.28 |
1.01 |
* (not sure why these were modified)
Calibrated under the following conditions:
(1) Au (111) ring [2.35 Å d-spacing] was used (also LHC crystals)
(2) CCD pixel size = 24.8 micron. {[mag on CCD] / [mag on CM200]} = 1.4.
(3) Optical diffraction was used for film calibration, a 14.5mm distance on diffraction pattern corresponds a 0.1mm spacing.
Dividing Mccd/Mfilm will give mag factor of CCD camera relative to film
for 17.5k - 100k, average is 1.319 SD=0.017
for 275k - 660k, average is 1.264 SD=0.017
Don't know why there is a discrepancy. Maybe higher defocus + beam convergence for lower mags
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