Detection of Alb-haA1 transgenic mouse allele by genomic DNA PCR analysis

DNA prep:

 

 

 

 

 

Prepare genomic DNA using proteinaseK method. (the NaOH method is less effective)

PCR primer

 

 

 

 

 

Sense

haGADD34.1S

5Õ CGG GCT GCA GGA ATT CGA TCT CGT T 3Õ

 

Antisense

haGADD34. 6AS

5Õ CTG TGT CCT CTC CAG GGC AAC AGA C 3Õ

PCR fragment

 

 

 

 

 

 

335

bp

only in transgenic mouse

PCR solution

 

 

 

 

 

 

set

×1

 

 

 

 

ddH2O

18.05

 

 

 

 

10× buf

2.5

 

 

 

 

2.5 mM dNTP

1.25

 

 

 

 

20 uM SP

0.5

 

 

 

 

20 uM AP

0.5

 

 

 

 

homemade Taq

0.2

 

 

 

 

genomic DNA *

2

 

 

 

 

 

25

 

 

 

 

homemade 10x buffer (500mM Tris pH 9.0, 200mM NH4SO4, 15mM MgCl2)

 

* DNA dilution (1/20-1/50) may increase sensitivity of PCR reaction

PCR protocol

 

 

 

 

 

 

Denature

96

5 min

 

 

 

Denature

94

1 min

35 – 40

cycles

 

 

Anneal

55

1 min

 

 

Extend

72

1 min

 

 

Extend

72

7 min

 

 

 

 

End