@text
Kinemage Supplement to Branden & Tooze "Introduction to Protein Structure", Second Edition
Chapter 10 -  SPECIFIC TRANSCRIPTION FACTORS BELONG TO A FEW FAMILIES

		Contents of file c10TFfam.kin:
*{Kin 1}* A CCHH Zn finger structure (Fig. 10.1)
*{Kin 2}* Zif/268: 3 tandem CCHH Zn fingers, DNA complex (Fig. 10.3-10.6)
*{Kin 3}* Glucocorticoid receptor DNA-binding domains (Fig. 10.8-10.11)
*{Kin 4}* The 4-Cys binuclear Zn of Gal4, in DNA complex (Fig. 10.13-10.15)
*{Kin 5}* Leucine zipper peptide dimer from GCN4 (Fig. 10.18)
*{Kin 6}* MyoD dimer/DNA complex (Fig. 10.24-10.27)
*{Kin 7]* Max dimer/DNA complex ribbons (Fig. 10.28-10.29)


    *{Kinemage 1}* shows the structure of a CCHH Zn finger (model 1, from a set of NMR-determined structures).  View1 and the coloring match Fig. 10.1, with the helix in seagreen and the beta hairpin in pink.  The 4 Zn ligand side chains are shown, with His in shades of blue and Cys of yellow.  Contacts with DNA are made primarily by side chains on the bottom half of the finger (away from the Zn site, which ties this very small structure together) and by the N-terminal end of the helix.  View3 looks down the helix from the end; it starts off alpha-helical (rather square cross-section), but the second half is 3-10 helix, with tighter i to i+3 H-bonds and a triangular appearance in cross-section.  View4 shows the beta hairpin, which has only 3 H-bonds and is somewhat irregular.

    *{Kinemage 2}* shows the structure of Zif/268, which has 3 tandem Zn fingers of the CCHH type (each in a different color), bound to DNA.  The 3 fingers are similar but not identical, and their DNA-binding interactions are also similar, with the end of the finger in the groove and the Zn toward the outside.  The start-up view is similar to both Fig. 10.3 and 10.4, showing all 3 fingers coiling along the major groove, but emphasizing the contacts of finger 2 (in greens).  View2 is from the end of the DNA, showing that it is quite straight and B-form.
    View3 to 5 are close-ups of individual binding interactions;  turn on "dots" and "side ch" to see small-probe contact dots between finger 2 and the DNA, colored by atom type.  View3 shows two of the many Arg-Guanine double H-bonds in Zif/268 (as in Fig. 10.6), with Arg 146 braced by salt links to Asp 148.  View4 shows that His 149, as well as making a specific H-bond, also has extensive stacking interactions with the Thymine ring and methyl above it.  View5 shows that His 153 bridges between the Zn and the DNA phosphate backbone.

    *{Kinemage 3}* shows a dimer of the glucocorticoid receptor DNA-binding domains.  Each domain has two 4-Cys Zn sites, one (in the red region) that stabilizes the DNA-binding helix and one (in the green region) that stabilizes the dimerization loop.  The first two views are side and end views of the overall DNA complex;  the DNA is unbent, with two GRE (glucocorticoid response element) sites separated by a spacer.  In this structure the spacer is one base-pair too long, so that the darker-color domain binds in the correct sequence-specific manner, but the light-color domain is out of register and slightly further from the DNA.
    View3 shows a single glucocorticoid domain (like Fig. 10.9);  turn off "DNA" temporarily, to see the organization of the two Zn regions.  View4 looks down the DNA-recognition helix.  Note the Arg-Guanine interaction and the Val contacting a Thymine methyl.  This Zn binds across the N-cap and N3 positions of the alpha-helix, rather like the position of the active disulfide in thioredoxin or disulfide isomerase.  View5 looks down the approximate 2-fold axis at the interaction of the two dimerization loops (purple).

   *{Kinemage 4}* shows the transcription factor GAL4, which has a binuclear Zn with all Cys ligands, and which forms a scissors-grip complex with DNA.  (For determining this NMR structure, the Zns were substituted with Cd.)  View1 shows the overall complex, in which each subunit has an N-terminal CCCC Zn finger that binds to the DNA, and a short C-terminal Leucine zipper which forms the dimer.  View2 looks down the axis of the DNA.  View3 and 4 are closeups of one of the Zn finger domains, showing how the two Zn atoms share 6 Cys side chains, with each metal tetrahedrally coordinated (as in Fig. 10.14).  To see the side chains of the Leu zipper, choose View5 and turn on "Leu zip".

    *{Kinemage 5}* shows the structure of a peptide dimer from the GCN4 leucine zipper, initially viewed from the side.  The two chains have identical sequences and are oriented parallel, with the N-termini at the top and a Leu side chain (seagreen) every seventh residue in the sequence.  The leucines contact each other in pairs that look more like rungs on a ladder than teeth on a zipper.  Click on the "animate" button for a tour of this structure.  The smooth bending and mutual coiling of the helices is emphasized by the second frame, which shows the helix axes.  Rotate the image or use stereo to see the supercoiling, which allows the helices to stay the same distance apart along their entire length; in contrast, most paired helices in globular proteins are straighter and diverge toward the ends.  The third frame zooms in and adds the intermediate rungs of the ladder - a row of hydrophobic side chains, mostly Val, halfway between the leucines.
    The rest of the animation sequence moves successively down the axis of the supercoil, viewed from the end.  A little more than two "rungs", or layers, will be in view at a time.  Notice how similar the geometry is for each rung of Leu side chains (seagreen); Val rungs (gold) are also similar to one another, but different in detail from Leu rungs.  Leu Cbetas point toward each other and their Cgammas turn out; Val Cbetas point outward, while one of their Cgammas points inward to touch.  Val is too short for optimal contact in a 'd' position, and Leu would not work in an 'a' position, because although its Cgamma could lie in the correct place its Cdeltas would then bump into the opposite helix.  The central rung of gold 'a' positions are Asn side chains rather than Val;  their specific H-bond interaction is important for keeping these otherwise-repeating contacts in the correct register.

    *{Kinemage 6}* shows the DNA complex of transcription factor MyoD, which has a basic region and a helix-loop-helix dimerization region.  One monomer is in greens, the other in pinks.  View2 is a close-up of the helix-loop-helix dimerization region, with its hydrophobic core of side chains.  View3 is a close-up of the basic region binding in the major groove, with the + charged interacting side chains shown; most bind the phosphate backbone, but one Arg makes a specific base interaction.

    *{Kinemage 7}* shows DNA and ribbons for the dimer of transcription factor Max, which has a basic region, a helix-loop-helix (HLH) region, and a leucine zipper (Lzip) coiled-coil (the regions are labelled).  The dimer is held together by both the HLH and the Lzip, while the basic regions form a scissors-grip interaction with the major grooves of an unbent DNA.

    Copyright 1999 Jane S. and David C. Richardson.  Permission freely granted for educational, research, and personal use.  For program updates and more information, see http://kinemage.biochem.duke.edu.
@kinemage 1
@caption  (B&T Fig. 10.1)
The structure of a CCHH Zn finger.  Main chain is in seagreen (helix), pink (antiparallel beta hairpin), and white (other), with brown backbone H-bonds.  Zn is a gray ball, and its ligand side chains are in yellow with gold S (Cys) and skyblue with blue N (His).  (from PDB file 1ZNF)
@onewidth
@viewid {Fig. 10.1}
@zoom 1.17
@zslab 120
@center -1.063 -0.505 .481
@matrix
0.344723 -.93384 .095446 -.910163 -.357391 -.209462 .229716 -.014665 -.973147
@2viewid {Zn site}
@2zoom 1.6
@2zslab 100
@2center -3.245 -2.769 -1.19
@2matrix
0.338862 -.924569 .1742 -.901748 -.371982 -.22018 .268373 -.082474 -.959778
@3viewid {helix end}
@3zoom 1.3
@3zslab 200
@3center -1.036 2.666 -1.648
@3matrix
0.253448 -.262993 -.930914 -.929088 .201796 -.309959 .269372 .943458 -.193198
@4viewid {beta hairpin}
@4zoom 1.35
@4zslab 80
@4center 2.709 -3.871 .536
@4matrix
0.002379 -.819884 .572525 .13295 -.567184 -.812789 .99112 .078051 .107655
@group {CCHH ZnF}
@subgroup {main ch} dominant
@vectorlist {mc other} color= white
{ca cys 3}P .339 -3.606 2.084
{c cys 3}-0.487 -4.38 3.118
{o cys 3}-1.424 -3.827 3.690
{c cys 3}P -0.487 -4.38 3.118
{n gly 4}-0.186 -5.657 3.367
{ca gly 4}-0.945 -6.455 4.324
{c gly 4}-2.227 -6.974 3.680
{o gly 4}-2.476 -8.175 3.683
{c gly 4}P -2.227 -6.974 3.680
{n leu 5}-3.035 -6.076 3.108
{ca leu 5}-4.282 -6.451 2.455
{c leu 5}-3.984 -7.207 1.158
{o leu 5}-4.704 -8.144 .825
{c leu 5}P -3.984 -7.207 1.158
{n cys 6}-2.928 -6.819 .430
{ca cys 6}-2.522 -7.511 -0.798
{c cys 6}-1.001 -7.701 -0.887
{o cys 6}-0.492 -8.137 -1.915
{c cys 6}P -1.001 -7.701 -0.887
{n glu 7}-0.288 -7.386 .199
{ca glu 7}1.154 -7.501 .392
{c glu 7}2.08 -7.158 -0.780
{o glu 7}3.214 -7.635 -0.812
{c glu 7}P 2.08 -7.158 -0.780
{n arg 8}1.656 -6.31 -1.717
{ca arg 8}2.545 -5.868 -2.774
{ca val 11}P 9.698 .307 -1.976
{c val 11}9.696 1.483 -0.986
{o val 11}10.56 1.542 -0.114
{c val 11}P 9.696 1.483 -0.986
{n glu 12}8.738 2.412 -1.112
{ca glu 12}8.623 3.59 -0.261
{ca lys 24}P -8.995 2.267 1.720
{c lys 24} -9.904 1.773 2.849
{o lys 24}-10.844 2.453 3.252
{c lys 24}P -9.904 1.773 2.849
{n asn 25}-9.605 .574 3.360
{ca asn 25}-10.345 -0.07 4.442
{c asn 25}-11.845 -0.179 4.120
{o asn 25}-12.687 -0.128 5.013
@vectorlist {mc beta} color= pink
{c ace }P 8.277 -3.313 1.150
{o ace }7.989 -4.439 1.552
{c ace }P 8.277 -3.313 1.150
{n tyr 1}7.651 -2.215 1.575
{ca tyr 1}6.581 -2.227 2.557
{c tyr 1}5.413 -3.038 1.996
{o tyr 1}4.881 -2.705 .940
{c tyr 1}P 5.413 -3.038 1.996
{n lys 2}5.022 -4.101 2.696
{ca lys 2}3.925 -4.956 2.283
{c lys 2}2.603 -4.365 2.774
{o lys 2}2.433 -4.116 3.964
{c lys 2}P 2.603 -4.365 2.774
{n cys 3}1.669 -4.148 1.846
{ca cys 3}0.339 -3.606 2.084
{ca arg 8}P 2.545 -5.868 -2.774
{c arg 8}3.631 -5.05 -2.063
{o arg 8}3.318 -4.215 -1.215
{c arg 8}P 3.631 -5.05 -2.063
{n ser 9}4.895 -5.333 -2.367
{ca ser 9}6.056 -4.721 -1.735
{c ser 9}6.366 -3.324 -2.287
{o ser 9}7.09 -3.192 -3.272
{c ser 9}P 6.366 -3.324 -2.287
{n phe 10}5.84 -2.274 -1.654
{ca phe 10}6.075 -0.895 -2.066
{c phe 10}7.392 -0.401 -1.486
{o phe 10}7.516 -0.245 -0.276
{c phe 10}P 7.392 -0.401 -1.486
{n val 11}8.378 -0.152 -2.347
{ca val 11}9.698 .307 -1.976
@vectorlist {mc helix} color= sea
{ca glu 12}P 8.623 3.59 -0.261
{c glu 12}7.24 3.67 .401
{o glu 12}6.217 3.313 -0.191
{c glu 12}P 7.24 3.67 .401
{n lys 13}7.214 4.141 1.652
{ca lys 13}6.001 4.269 2.453
{c lys 13}5.001 5.236 1.809
{o lys 13}3.792 5.088 1.977
{c lys 13}P 5.001 5.236 1.809
{n ser 14}5.487 6.218 1.055
{ca ser 14}4.661 7.165 .327
{c ser 14}3.789 6.368 -0.646
{o ser 14}2.565 6.502 -0.667
{c ser 14}P 3.789 6.368 -0.646
{n ala 15}4.443 5.516 -1.441
{ca ala 15}3.781 4.655 -2.408
{c ala 15}2.799 3.73 -1.692
{o ala 15}1.691 3.54 -2.180
{c ala 15}P 2.799 3.73 -1.692
{n leu 16}3.175 3.164 -0.539
{ca leu 16}2.314 2.301 .235
{c leu 16}1.036 3.057 .608
{o leu 16}-0.078 2.572 .398
{c leu 16}P 1.036 3.057 .608
{n ser 17}1.21 4.258 1.167
{ca ser 17}0.108 5.111 1.572
{c ser 17}-0.808 5.347 .372
{o ser 17}-2.011 5.107 .454
{c ser 17}P -0.808 5.347 .372
{n arg 18}-0.227 5.80 -0.744
{ca arg 18}-0.951 6.067 -1.979
{c arg 18}-1.711 4.815 -2.429
{o arg 18}-2.886 4.901 -2.802
{c arg 18}P -1.711 4.815 -2.429
{n his 19}-1.057 3.65 -2.386
{ca his 19}-1.63 2.384 -2.797
{c his 19}-2.913 2.087 -2.026
{o his 19}-3.796 1.449 -2.586
{c his 19}P -2.913 2.087 -2.026
{n gln 20}-3.084 2.545 -0.781
{ca gln 20}-4.337 2.265 -0.098
{c gln 20}-5.572 2.752 -0.850
{o gln 20}-6.645 2.241 -0.560
{c gln 20}P -5.572 2.752 -0.850
{n arg 21}-5.475 3.677 -1.817
{ca arg 21}-6.644 4.09 -2.600
{c arg 21}-7.372 2.864 -3.175
{o arg 21}-8.584 2.888 -3.375
{c arg 21}P -7.372 2.864 -3.175
{n val 22}-6.619 1.792 -3.430
{ca val 22}-7.045 .523 -3.968
{c val 22}-8.027 -0.219 -3.045
{o val 22}-8.794 -1.052 -3.525
{c val 22}P -8.027 -0.219 -3.045
{n his 23}-8.00 .049 -1.733
{ca his 23}-8.827 -0.647 -0.743
{c his 23}-9.509 .319 .221
{o his 23}-10.702 .22 .499
{c his 23}P -9.509 .319 .221
{n lys 24}-8.699 1.234 .751
{ca lys 24}-8.995 2.267 1.720
@subgroup {Hbonds} dominant
@vectorlist {H-bonds} color= brown
{tyr 1 hn}P U 7.93 -1.33 1.2
{phe 1 o}U 7.64 -0.57 .17
{cys 3 hn}P U 1.90 -4.38 .9
{arg 8 o}U 2.89 -4.26 -0.58
{phe 1 hn}P U 5.26 -2.44 -0.86
{tyr 1 o}U 4.99 -2.63 .4
{leu 16 hn}P U 4.09 3.34 -0.19
{glu 12 o}U 5.58 3.32 -0.19
{ser 17 hn}P U 2.14 4.59 1.32
{lys 13 o}U 3.30 4.94 1.78
{arg 18 hn}P U .76 5.97 -0.73
{ser 14 o}U 2.02 6.34 -0.69
{his 19 hn}P U -0.12 3.64 -2.05
{ala 15 o}U 1.15 3.57 -2.14
{gln 2 hn}P U -2.37 3.07 -0.32
{leu 16 o}U -0.76 2.72 .18
{gln 2 hn}P U -2.37 3.07 -0.32
{ser 17 o}U -2.12 4.50 .22
{arg 21 hn}P U -4.59 4.09 -2.01
{arg 18 o}U -3.40 4.66 -2.56
{val 22 hn}P U -5.64 1.87 -3.23
{his 19 o}U -4.35 1.57 -2.78
{his 23 hn}P U -7.38 .76 -1.41
{gln 2 o}U -6.87 1.80 -0.82
{lys 24 hn}P U -7.75 1.21 .44
{gln 2 o}U -6.98 1.93 -0.26
@subgroup {Zn site} dominant
@balllist {sc N} color= blue radius= .1
{nd1 his 19}-1.509 -0.633 -4.051
{ne2 his 19} -2.09 -1.975 -2.405
{nd1 his 23}-6.979 -3.29 -1.551
{ne2 his 23} -4.818 -2.975 -1.254
@balllist {sc S} color= gold radius= .12
{sg cys 3} -2.153 -3.317 .825
{sg cys 6} -2.183 -5.291 -2.481
@vectorlist {Cys} color= yellow
{ca cys 3}P .339 -3.606 2.084
{cb cys 3}-0.379 -3.579 .736
{sg cys 3}-2.153 -3.317 .825
{ca cys 6}P -2.522 -7.511 -0.798
{cb cys 6}-3.067 -6.796 -2.036
{sg cys 6}-2.183 -5.291 -2.481
@vectorlist {His} color= sky
{ca his 19}P -1.63 2.384 -2.797
{cb his 19}-0.543 1.313 -2.688
{cg his 19}-1.086 -0.062 -2.873
{nd1 his 19}-1.509 -0.633 -4.051
{ce1 his 19}-2.098 -1.798 -3.734
{ne2 his 19}-2.09 -1.975 -2.405
{cg his 19}P -1.086 -0.062 -2.873
{cd2 his 19}-1.43 -0.892 -1.851
{ne2 his 19}-2.09 -1.975 -2.405
{ca his 23}P -8.827 -0.647 -0.743
{cb his 23}-7.942 -1.581 .093
{cg his 23}-6.83 -2.25 -0.663
{nd1 his 23}-6.979 -3.29 -1.551
{ce1 his 23}-5.747 -3.692 -1.897
{ne2 his 23}-4.818 -2.975 -1.254
{cg his 23}P -6.83 -2.25 -0.663
{cd2 his 23}-5.492 -1.996 -0.507
{ne2 his 23}-4.818 -2.975 -1.254
@balllist {Zn} color= gray radius= .4
{Zn} -2.88 -3.408 -1.345
@vectorlist {bonds} color= purple
{ne2 his 23}P U -4.233 -3.106 -1.281
{Zn}U -3.465 -3.277 -1.318
{"}P U -2.637 -2.967 -1.671
{ne2 his 19}U -2.333 -2.416 -2.079
{sg cys 3}P U -2.343 -3.341 .257
{Zn}U -2.69 -3.384 -0.777
{"}P U -2.699 -3.898 -1.640
{sg cys 6}U -2.364 -4.801 -2.186

@kinemage 2
@caption (B&T Fig. 10.3,10.4,10.6)
Triple Zn finger of Zif268 bound to DNA. Finger 1 in pinks, finger 2 in greens, finger 3 in blues. Turn on "dots" and "side ch" (in View3-5) to see interactions of finger 2 with DNA; the contact dots are color-coded by atom type. (from PDB file 1AAY; contact dots calculated by Probe) 
@listcolordominant
@onewidth
@zoom 1.20
@zslab 200
@ztran 
@center 2.356 13.01 45.414
@matrix
0.425431 .532871 .731476 -0.611262 .765229 -0.201946 -0.667358 -0.36121 .651277
@2viewid {end}
@2zoom 1.00
@2zslab 200
@2ztran 
@2center .012 13.028 50.679
@2matrix
0.648082 .352054 .675313 -0.64318 -0.221817 .732882 .40781 -0.909316 .082679
@3viewid {Arg-Arg-His}
@3zoom 3.45
@3zslab 135
@3center .678 6.683 51.528
@3matrix
-0.78158 .558838 .277187 .579584 .486227 .653961 .230681 .671776 -0.703918
@4viewid {His stack}
@4zoom 3.50
@4zslab 105
@4center 3.329 10.062 50.035
@4matrix
0.769977 .412802 .486547 -0.220078 .887551 -0.404744 -0.598913 .204565 .774243
@5viewid {His lig}
@5zoom 2.90
@5zslab 110
@5center 15.519 9.20 46.580
@5matrix
0.295302 -0.196908 .934892 -0.862982 .364898 .349444 -0.409949 -0.909988 -0.062173
@master {side ch}
@master {Zn site}
@master {wide contact}
@master {close contact}
@master {small overlap}
@master {H-bonds}
@group {Zif 268}
@subgroup {Zn F 1} dominant
@vectorlist {mc} color= pinktint
{ca arg a 103}P -14.086 7.928 60.338
{ca pro a 104}-14.51 4.541 62.140
{ca tyr a 105}-10.792 3.706 62.259
{ca ala a 106}-8.79 5.401 65.013
{ca cys a 107}-5.06 4.929 65.486
{ca pro a 108}-4.431 2.795 68.644
{ca val a 109}-1.163 4.508 69.609
{ca glu a 110}-2.115 6.558 72.686
{ca ser a 111}0.157 9.463 71.683
{ca cys a 112}-1.521 9.741 68.274
{ca asp a 113}-5.148 10.638 67.461
{ca arg a 114}-5.598 10.103 63.705
{ca arg a 115}-8.854 8.565 62.407
{ca phe a 116}-9.584 7.162 58.930
{ca ser a 117}-12.509 6.264 56.646
{ca arg a 118}-11.166 2.929 55.426
{ca ser a 119}-9.209 .207 57.179
{ca asp a 120}-6.448 .272 54.567
{ca glu a 121}-5.771 3.924 55.369
{ca leu a 122}-5.193 2.896 59.007
{ca thr a 123}-2.822 .10 58.015
{ca arg a 124}-0.786 2.43 55.805
{ca his a 125}-0.679 5.119 58.542
{ca ile a 126}0.312 2.569 61.207
{ca arg a 127}3.667 2.235 59.431
{ca ile a 128}4.841 5.633 60.732
{ca his a 129}4.572 4.114 64.237
{ca thr a 130}6.031 .667 63.519
{ca gly a 131}8.827 2.112 61.365
{ca gln a 132}8.141 -0.538 58.729
@vectorlist {sc 1} color= pink master= {side ch} off
{ca arg a 103}P -14.086 7.928 60.338
{cb arg a 103}-13.047 9.03 60.549
{cg arg a 103}-12.849 9.887 59.316
{cd arg a 103}-11.995 11.10 59.602
{ne arg a 103}-11.783 11.899 58.396
{cz arg a 103}-10.595 12.099 57.834
{nh1 arg a 103}-9.507 11.555 58.370
{cz arg a 103}P -10.595 12.099 57.834
{nh2 arg a 103}-10.493 12.837 56.734
{ca arg a 114}P -5.598 10.103 63.705
{cb arg a 114}-4.444 9.761 62.750
{cg arg a 114}-3.172 10.589 62.908
{cd arg a 114}-3.332 11.99 62.373
{ne arg a 114}-3.707 11.988 60.964
{cz arg a 114}-4.424 12.947 60.383
{nh1 arg a 114}-4.842 13.992 61.088
{cz arg a 114}P -4.424 12.947 60.383
{nh2 arg a 114}-4.753 12.846 59.100
{ca arg a 118}P -11.166 2.929 55.426
{cb arg a 118}-10.817 2.795 53.945
{cg arg a 118}-11.703 3.584 53.012
{cd arg a 118}-11.536 3.14 51.566
{ne arg a 118}-10.14 3.071 51.142
{cz arg a 118}-9.706 3.357 49.919
{nh1 arg a 118}-10.554 3.752 48.976
{cz arg a 118}P -9.706 3.357 49.919
{nh2 arg a 118}-8.428 3.185 49.619
{ca asp a 120}P -6.448 .272 54.567
{cb asp a 120}-6.573 -0.017 53.061
{cg asp a 120}-7.382 1.02 52.325
{od1 asp a 120}-8.588 1.14 52.597
{cg asp a 120}P -7.382 1.02 52.325
{od2 asp a 120}-6.811 1.703 51.451
{ca arg a 124}P -0.786 2.43 55.805
{cb arg a 124}-1.306 3.162 54.564
{cg arg a 124}-0.243 3.939 53.798
{cd arg a 124}-0.832 4.593 52.568
{ne arg a 124}-1.751 5.66 52.935
{cz arg a 124}-2.294 6.514 52.074
{nh1 arg a 124}-2.02 6.431 50.775
{cz arg a 124}P -2.294 6.514 52.074
{nh2 arg a 124}-3.101 7.462 52.520
@vectorlist {sc Zn} color= pink master= {Zn site}
{ca cys a 107}P -5.06 4.929 65.486
{cb cys a 107}-3.974 5.937 65.131
{sg cys a 107}-2.331 5.283 65.395
{ca cys a 112}P -1.521 9.741 68.274
{cb cys a 112}-0.972 8.853 67.155
{sg cys a 112}-1.699 9.097 65.536
{ca his a 125}P -0.679 5.119 58.542
{cb his a 125}-1.924 5.81 59.121
{cg his a 125}-1.69 6.478 60.443
{nd1 his a 125}-1.164 7.746 60.557
{ce1 his a 125}-1.01 8.046 61.833
{ne2 his a 125}-1.425 7.02 62.552
{ce1 his a 125}-1.01 8.046 61.833
{cg his a 125}P -1.69 6.478 60.443
{cd2 his a 125}-1.859 6.029 61.709
{ne2 his a 125}-1.425 7.02 62.552
{ce1 his a 125}-1.01 8.046 61.833
{ca his a 129}P 4.572 4.114 64.237
{cb his a 129}3.234 3.868 64.950
{cg his a 129}2.345 5.072 65.007
{nd1 his a 129}2.727 6.255 65.604
{ce1 his a 129}1.742 7.132 65.513
{ne2 his a 129}0.735 6.561 64.877
{ce1 his a 129}1.742 7.132 65.513
{cg his a 129}P 2.345 5.072 65.007
{cd2 his a 129}1.087 5.273 64.550
{ne2 his a 129}0.735 6.561 64.877
{ce1 his a 129}1.742 7.132 65.513
@balllist {Zn} color= gray master= {Zn site} radius= .400
{Zn zn 201}-1.141 6.979 64.613
@vectorlist {Zn bonds} color= hotpink master= {Zn site}
{ne2 his a 129}P U .058 6.712 64.782
{Zn zn 201}U -0.464 6.828 64.708
{"}P U -1.305 7.603 64.885
{sg cys a 112}U -1.535 8.473 65.264
{sg cys a 107}P U -1.955 5.819 65.148
{Zn zn 201}U -1.517 6.443 64.860
{ne2 his a 125}P U -1.329 7.006 63.245
{Zn zn 201}U -1.237 6.993 63.920
@vectorlist {Hbonds} color= purple master= {side ch} off
{o6 g b 8}P U -2.709 7.662 49.134
{nh1 arg a 124}U -2.243 6.829 50.244
{n7 g b 8}P U -4.30 8.525 51.364
{nh2 arg a 124}U -3.526 7.839 52.110
@subgroup {Zn F 2} dominant
@vectorlist {mc} color= greentint
{ca gln a 132}P 8.141 -0.538 58.729
{c gln a 132}8.157 .164 57.379
{o gln a 132}7.333 1.037 57.111
{c gln a 132}P 8.157 .164 57.379
{n lys a 133}9.114 -0.224 56.543
{ca lys a 133}9.283 .33 55.202
{c lys a 133}9.50 -0.851 54.253
{o lys a 133}10.629 -1.241 53.968
{c lys a 133}P 9.50 -0.851 54.253
{n pro a 134}8.40 -1.418 53.736
{ca pro a 134}8.344 -2.564 52.824
{c pro a 134}9.027 -2.463 51.460
{o pro a 134}9.403 -3.48 50.885
{c pro a 134}P 9.027 -2.463 51.460
{n phe a 135}9.19 -1.255 50.940
{ca phe a 135}9.775 -1.089 49.612
{c phe a 135}11.207 -0.58 49.613
{o phe a 135}11.527 .392 50.275
{c phe a 135}P 11.207 -0.58 49.613
{n gln a 136}12.071 -1.258 48.870
{ca gln a 136}13.479 -0.895 48.814
{c gln a 136}13.922 -0.484 47.412
{o gln a 136}13.535 -1.107 46.421
{c gln a 136}P 13.922 -0.484 47.412
{n cys a 137}14.728 .573 47.337
{ca cys a 137}15.239 1.063 46.061
{c cys a 137}16.34 .126 45.580
{o cys a 137}17.352 -0.072 46.266
{c cys a 137}P 16.34 .126 45.580
{n arg a 138}16.141 -0.422 44.387
{ca arg a 138}17.083 -1.349 43.768
{c arg a 138}18.443 -0.691 43.566
{o arg a 138}19.478 -1.364 43.578
{c arg a 138}P 18.443 -0.691 43.566
{n ile a 139}18.44 .634 43.424
{ca ile a 139}19.677 1.37 43.198
{c ile a 139}20.475 1.77 44.435
{o ile a 139}21.617 1.354 44.575
{c ile a 139}P 20.475 1.77 44.435
{n cys a 140}19.894 2.568 45.324
{ca cys a 140}20.622 3.013 46.511
{c cys a 140}20.357 2.212 47.787
{o cys a 140}20.976 2.479 48.821
{c cys a 140}P 20.357 2.212 47.787
{n met a 141}19.442 1.248 47.718
{ca met a 141}19.091 .40 48.864
{c met a 141}18.273 1.069 49.976
{o met a 141}17.973 .436 50.986
{c met a 141}P 18.273 1.069 49.976
{n arg a 142}17.891 2.33 49.795
{ca arg a 142}17.092 3.012 50.807
{c arg a 142}15.687 2.425 50.818
{o arg a 142}15.148 2.077 49.768
{c arg a 142}P 15.687 2.425 50.818
{n asn a 143}15.098 2.329 52.008
{ca asn a 143}13.759 1.775 52.170
{c asn a 143}12.703 2.869 52.276
{o asn a 143}12.978 3.963 52.759
{c asn a 143}P 12.703 2.869 52.276
{n phe a 144}11.488 2.548 51.840
{ca phe a 144}10.388 3.498 51.843
{c phe a 144}9.116 2.863 52.385
{o phe a 144}8.887 1.652 52.234
{c phe a 144}P 9.116 2.863 52.385
{n ser a 145}8.271 3.705 52.973
{ca ser a 145}7.007 3.263 53.548
{c ser a 145}5.964 2.955 52.490
{o ser a 145}5.056 2.154 52.728
{c ser a 145}P 5.964 2.955 52.490
{n arg a 146}6.105 3.572 51.317
{ca arg a 146}5.127 3.395 50.253
{c arg a 146}5.702 3.135 48.862
{o arg a 146}6.796 3.589 48.540
{c arg a 146}P 5.702 3.135 48.862
{n ser a 147}4.923 2.419 48.047
{ca ser a 147}5.291 2.058 46.677
{c ser a 147}5.32 3.242 45.725
{o ser a 147}6.192 3.327 44.859
{c ser a 147}P 5.32 3.242 45.725
{n asp a 148}4.323 4.112 45.825
{ca asp a 148}4.28 5.284 44.953
{c asp a 148}5.455 6.229 45.223
{o asp a 148}6.017 6.813 44.294
{c asp a 148}P 5.455 6.229 45.223
{n his a 149}5.861 6.332 46.486
{ca his a 149}6.983 7.191 46.843
{c his a 149}8.301 6.567 46.370
{o his a 149}9.27 7.275 46.081
{c his a 149}P 8.301 6.567 46.370
{n leu a 150}8.333 5.24 46.278
{ca leu a 150}9.527 4.563 45.783
{c leu a 150}9.635 4.853 44.284
{o leu a 150}10.716 5.133 43.769
{c leu a 150}P 9.635 4.853 44.284
{n thr a 151}8.496 4.818 43.598
{ca thr a 151}8.447 5.073 42.162
{c thr a 151}8.99 6.449 41.800
{o thr a 151}9.804 6.579 40.892
{c thr a 151}P 8.99 6.449 41.800
{n thr a 152}8.563 7.473 42.532
{ca thr a 152}9.044 8.809 42.239
{c thr a 152}10.485 8.987 42.702
{o thr a 152}11.276 9.668 42.056
{c thr a 152}P 10.485 8.987 42.702
{n his a 153}10.856 8.296 43.772
{ca his a 153}12.216 8.386 44.260
{c his a 153}13.199 7.863 43.215
{o his a 153}14.286 8.429 43.032
{c his a 153}P 13.199 7.863 43.215
{n ile a 154}12.838 6.76 42.565
{ca ile a 154}13.719 6.155 41.567
{c ile a 154}14.088 7.099 40.436
{o ile a 154}15.203 7.016 39.910
{c ile a 154}P 14.088 7.099 40.436
{n arg a 155}13.188 8.032 40.114
{ca arg a 155}13.447 9.018 39.060
{c arg a 155}14.642 9.932 39.349
{o arg a 155}15.251 10.485 38.431
{c arg a 155}P 14.642 9.932 39.349
{n thr a 156}14.99 10.061 40.626
{ca thr a 156}16.122 10.883 41.031
{c thr a 156}17.428 10.214 40.564
{o thr a 156}18.473 10.87 40.432
{c thr a 156}P 17.428 10.214 40.564
{n his a 157}17.355 8.903 40.340
{ca his a 157}18.501 8.127 39.890
{c his a 157}18.58 8.089 38.378
{o his a 157}19.662 8.258 37.795
{c his a 157}P 18.58 8.089 38.378
{n thr a 158}17.429 7.85 37.753
{ca thr a 158}17.341 7.722 36.301
{c thr a 158}17.314 9.019 35.519
{o thr a 158}17.689 9.034 34.351
{c thr a 158}P 17.314 9.019 35.519
{n gly a 159}16.874 10.10 36.162
{ca gly a 159}16.795 11.392 35.491
{c gly a 159}15.561 11.503 34.618
{o gly a 159}15.455 12.375 33.753
{c gly a 159}P 15.561 11.503 34.618
{n glu a 160}14.631 10.584 34.844
{ca glu a 160}13.382 10.53 34.113
@vectorlist {sc 2} color= sea master= {side ch} off
{ca arg a 142}P 17.092 3.012 50.807
{cb arg a 142}17.025 4.513 50.529
{cg arg a 142}16.202 5.295 51.547
{cd arg a 142}16.207 6.789 51.228
{ne arg a 142}15.484 7.58 52.224
{cz arg a 142}15.652 8.887 52.390
{nh1 arg a 142}16.513 9.544 51.626
{cz arg a 142}P 15.652 8.887 52.390
{nh2 arg a 142}14.993 9.531 53.342
{ca ser a 145}P 7.007 3.263 53.548
{cb ser a 145}6.455 4.332 54.510
{og ser a 145}6.268 5.601 53.885
{ca arg a 146}P 5.127 3.395 50.253
{cb arg a 146}4.207 4.616 50.219
{cg arg a 146}3.274 4.728 51.420
{cd arg a 146}2.763 6.15 51.613
{ne arg a 146}2.218 6.738 50.389
{cz arg a 146}1.373 7.76 50.373
{nh1 arg a 146}0.971 8.304 51.510
{cz arg a 146}P 1.373 7.76 50.373
{nh2 arg a 146}0.929 8.241 49.220
{ca asp a 148}P 4.28 5.284 44.953
{cb asp a 148}2.926 6.01 45.038
{cg asp a 148}2.569 6.468 46.444
{od1 asp a 148}2.912 5.793 47.443
{cg asp a 148}P 2.569 6.468 46.444
{od2 asp a 148}1.90 7.514 46.541
{ca his a 149}P 6.983 7.191 46.843
{cb his a 149}6.993 7.48 48.349
{cg his a 149}5.859 8.356 48.800
{nd1 his a 149}5.169 9.184 47.939
{ce1 his a 149}4.241 9.841 48.609
{ne2 his a 149}4.303 9.47 49.874
{ce1 his a 149}4.241 9.841 48.609
{cg his a 149}P 5.859 8.356 48.800
{cd2 his a 149}5.306 8.543 50.021
{ne2 his a 149}4.303 9.47 49.874
{ce1 his a 149}4.241 9.841 48.609
{ca thr a 156}P 16.122 10.883 41.031
{cb thr a 156}16.153 11.094 42.578
{og1 thr a 156}16.482 9.864 43.236
{cb thr a 156}P 16.153 11.094 42.578
{cg2 thr a 156}14.796 11.57 43.080
@vectorlist {sc Zn} color= sea master= {Zn site}
{ca cys a 137}P 15.239 1.063 46.061
{cb cys a 137}15.799 2.481 46.195
{sg cys a 137}16.483 3.127 44.648
{ca cys a 140}P 20.622 3.013 46.511
{cb cys a 140}20.339 4.487 46.786
{sg cys a 140}18.649 4.779 47.351
{ca his a 153}P 12.216 8.386 44.260
{cb his a 153}12.411 7.574 45.537
{cg his a 153}13.847 7.238 45.793
{nd1 his a 153}14.75 8.16 46.283
{ce1 his a 153}15.955 7.625 46.303
{ne2 his a 153}15.868 6.386 45.849
{ce1 his a 153}15.955 7.625 46.303
{cg his a 153}P 13.847 7.238 45.793
{cd2 his a 153}14.56 6.118 45.527
{ne2 his a 153}15.868 6.386 45.849
{ce1 his a 153}15.955 7.625 46.303
{ca his a 157}P 18.501 8.127 39.890
{cb his a 157}18.401 6.686 40.392
{cg his a 157}18.524 6.552 41.875
{nd1 his a 157}19.623 7.003 42.574
{ce1 his a 157}19.454 6.761 43.861
{ne2 his a 157}18.285 6.166 44.022
{ce1 his a 157}19.454 6.761 43.861
{cg his a 157}P 18.524 6.552 41.875
{cd2 his a 157}17.683 6.022 42.795
{ne2 his a 157}18.285 6.166 44.022
{ce1 his a 157}19.454 6.761 43.861
@vectorlist {sc H} color= gray master= {side ch} off
{cb cys a 137}P 15.799 2.481 46.195
{1hb cys a 137}15.00 3.152 46.544
{cb cys a 137}P 15.799 2.481 46.195
{2hb cys a 137}16.584 2.487 46.966
{cb cys a 140}P 20.339 4.487 46.786
{1hb cys a 140}21.044 4.856 47.546
{cb cys a 140}P 20.339 4.487 46.786
{2hb cys a 140}20.52 5.068 45.870
{cb arg a 142}P 17.025 4.513 50.529
{1hb arg a 142}18.047 4.918 50.510
{cb arg a 142}P 17.025 4.513 50.529
{2hb arg a 142}16.598 4.671 49.528
{cg arg a 142}P 16.202 5.295 51.547
{1hg arg a 142}15.167 4.921 51.552
{cg arg a 142}P 16.202 5.295 51.547
{2hg arg a 142}16.608 5.131 52.556
{cd arg a 142}P 16.207 6.789 51.228
{1hd arg a 142}17.247 7.144 51.168
{cd arg a 142}P 16.207 6.789 51.228
{2hd arg a 142}15.754 6.95 50.238
{ne arg a 142}P 15.484 7.58 52.224
{he arg a 142}14.826 7.11 52.813
{nh1 arg a 142}P 16.513 9.544 51.626
{1hh1 arg a 142}17.034 9.056 50.926
{nh1 arg a 142}P 16.513 9.544 51.626
{2hh1 arg a 142}16.641 10.528 51.749
{nh2 arg a 142}P 14.993 9.531 53.342
{1hh2 arg a 142}14.365 9.033 53.940
{nh2 arg a 142}P 14.993 9.531 53.342
{2hh2 arg a 142}15.123 10.515 53.462
{cb ser a 145}P 6.455 4.332 54.510
{1hb ser a 145}7.146 4.446 55.358
{cb ser a 145}P 6.455 4.332 54.510
{2hb ser a 145}5.495 3.987 54.921
{og ser a 145}P 6.268 5.601 53.885
{hg ser a 145}5.778 6.211 54.508
{cb arg a 146}P 4.207 4.616 50.219
{1hb arg a 146}4.824 5.525 50.162
{cb arg a 146}P 4.207 4.616 50.219
{2hb arg a 146}3.602 4.58 49.301
{cg arg a 146}P 3.274 4.728 51.420
{1hg arg a 146}2.42 4.047 51.285
{cg arg a 146}P 3.274 4.728 51.420
{2hg arg a 146}3.804 4.403 52.327
{cd arg a 146}P 2.763 6.15 51.613
{1hd arg a 146}1.985 6.151 52.390
{cd arg a 146}P 2.763 6.15 51.613
{2hd arg a 146}3.585 6.781 51.981
{ne arg a 146}P 2.218 6.738 50.389
{he arg a 146}2.499 6.346 49.513
{nh1 arg a 146}P .971 8.304 51.510
{1hh1 arg a 146}1.304 7.945 52.382
{nh1 arg a 146}P .971 8.304 51.510
{2hh1 arg a 146}0.334 9.075 51.498
{nh2 arg a 146}P .929 8.241 49.220
{1hh2 arg a 146}1.231 7.833 48.358
{nh2 arg a 146}P .929 8.241 49.220
{2hh2 arg a 146}0.292 9.012 49.212
{cb asp a 148}P 2.926 6.01 45.038
{1hb asp a 148}2.945 6.884 44.370
{cb asp a 148}P 2.926 6.01 45.038
{2hb asp a 148}2.136 5.34 44.668
{cb his a 149}P 6.993 7.48 48.349
{1hb his a 149}6.95 6.527 48.897
{cb his a 149}P 6.993 7.48 48.349
{2hb his a 149}7.946 7.961 48.615
{cd2 his a 149}P 5.306 8.543 50.021
{hd2 his a 149}5.604 8.046 50.956
{ce1 his a 149}P 4.241 9.841 48.609
{he1 his a 149}3.537 10.572 48.186
{ne2 his a 149}P 4.303 9.47 49.874
{he2 his a 149}3.714 9.809 50.608
{cb his a 153}P 12.411 7.574 45.537
{1hb his a 153}12.013 8.141 46.392
{cb his a 153}P 12.411 7.574 45.537
{2hb his a 153}11.828 6.644 45.468
{nd1 his a 153}P 14.75 8.16 46.283
{hd1 his a 153}14.525 9.089 46.577
{cd2 his a 153}P 14.56 6.118 45.527
{hd2 his a 153}14.166 5.172 45.128
{ce1 his a 153}P 15.955 7.625 46.303
{he1 his a 153}16.876 8.124 46.640
{cb thr a 156}P 16.153 11.094 42.578
{hb thr a 156}16.914 11.855 42.804
{og1 thr a 156}P 16.482 9.864 43.236
{hg1 thr a 156}15.643 9.36 43.440
{cg2 thr a 156}P 14.796 11.57 43.080
{1hg2 thr a 156}14.837 11.713 44.170
{cg2 thr a 156}P 14.796 11.57 43.080
{2hg2 thr a 156}14.539 12.523 42.595
{cg2 thr a 156}P 14.796 11.57 43.080
{3hg2 thr a 156}14.031 10.818 42.838
{cb his a 157}P 18.401 6.686 40.392
{1hb his a 157}17.436 6.264 40.074
{cb his a 157}P 18.401 6.686 40.392
{2hb his a 157}19.188 6.086 39.913
{nd1 his a 157}P 19.623 7.003 42.574
{hd1 his a 157}20.424 7.445 42.169
{cd2 his a 157}P 17.683 6.022 42.795
{hd2 his a 157}16.703 5.563 42.597
{ce1 his a 157}P 19.454 6.761 43.861
{he1 his a 157}20.165 7.012 44.662
@balllist {Zn} color= gray master= {Zn site} radius= .400
{Zn zn 202}17.389 5.04 45.507
@vectorlist {contacts} color= purple master= {side ch} off
{he2 his a 149}P 3.562 10.062 50.878
{n7 g b 6}3.203 10.659 51.514
{2hh1 arg a 146}P .026 9.324 51.558
{n7 g b 7}-0.757 9.957 51.710
{2hh2 arg a 146}P .087 9.339 49.109
{o6 g b 7}-0.428 10.162 48.849
{1hh2 arg a 146}P 1.367 7.768 47.988
{od2 asp a 148}1.764 7.579 46.911
{"}P 1.501 7.494 46.568
{1h4 c c 55}0.243 7.43 46.653
{he arg a 146}P 2.575 6.245 49.134
{od1 asp a 148}2.836 5.894 47.822
{hd1 his a 153}P 14.489 9.462 46.716
{o2p g b 4}14.40 10.389 47.063
@vectorlist {contacts} color= hotpink master= {Zn site}
{ne2 his a 153}P 16.163 6.125 45.783
{Zn zn 202}17.094 5.301 45.573
{ne2 his a 157}P 18.112 5.948 44.309
{Zn zn 202}17.562 5.258 45.220
{sg cys a 137}P 16.642 3.462 44.798
{Zn zn 202}17.23 4.705 45.357
{sg cys a 140}P 18.425 4.825 47.023
{Zn zn 202}17.613 4.994 45.835
@subgroup {Zn F 3} dominant
@vectorlist {mc} color= bluetint
{ca glu a 160}P 13.382 10.53 34.113
{ca lys a 161}11.014 13.521 33.927
{ca pro a 162}7.579 12.574 32.488
{ca phe a 163}5.857 15.932 33.183
{ca ala a 164}6.435 18.985 31.020
{ca cys a 165}5.14 22.522 31.437
{ca asp a 166}2.567 23.309 28.716
{ca ile a 167}3.888 26.852 28.482
{ca cys a 168}7.68 26.563 28.518
{ca gly a 169}8.326 22.839 28.128
{ca arg a 170}10.381 22.555 31.315
{ca lys a 171}10.321 18.954 32.563
{ca phe a 172}9.818 17.574 36.039
{ca ala a 173}9.997 14.228 37.779
{ca arg a 174}6.66 14.764 39.598
{ca ser a 175}3.268 16.24 38.700
{ca asp a 176}3.156 18.355 41.859
{ca glu a 177}6.476 19.903 40.823
{ca arg a 178}4.981 20.79 37.454
{ca lys a 179}1.849 22.16 39.157
{ca arg a 180}3.923 24.347 41.488
{ca his a 181}5.863 25.605 38.454
{ca thr a 182}3.073 26.385 35.955
{ca lys a 183}1.794 29.001 38.371
{ca ile a 184}4.86 31.214 37.814
{ca his a 185}3.687 32.062 34.298
{ca leu a 186}0.909 34.157 35.822
{ca arg a 187}3.633 36.02 37.724
@vectorlist {sc 3} color= sky master= {side ch} off
{ca arg a 170}P 10.381 22.555 31.315
{cb arg a 170}10.573 23.613 32.399
{cg arg a 170}11.43 23.146 33.545
{cd arg a 170}11.938 24.313 34.352
{ne arg a 170}12.485 23.935 35.656
{cz arg a 170}13.277 22.889 35.906
{nh1 arg a 170}13.655 22.046 34.948
{cz arg a 170}P 13.277 22.889 35.906
{nh2 arg a 170}13.734 22.714 37.137
{ca arg a 174}P 6.66 14.764 39.598
{cb arg a 174}6.752 14.76 41.135
{cg arg a 174}7.508 13.561 41.710
{cd arg a 174}7.624 13.533 43.247
{ne arg a 174}7.195 14.739 43.964
{cz arg a 174}7.625 15.068 45.186
{nh1 arg a 174}8.501 14.296 45.819
{cz arg a 174}P 7.625 15.068 45.186
{nh2 arg a 174}7.161 16.151 45.806
{ca ser a 175}P 3.268 16.24 38.700
{cb ser a 175}1.964 15.438 38.609
{og ser a 175}1.614 14.90 39.870
{ca asp a 176}P 3.156 18.355 41.859
{cb asp a 176}3.087 17.848 43.305
{cg asp a 176}4.359 17.189 43.756
{od1 asp a 176}4.665 16.079 43.281
{cg asp a 176}P 4.359 17.189 43.756
{od2 asp a 176}5.064 17.786 44.595
{ca arg a 180}P 3.923 24.347 41.488
{cb arg a 180}4.926 23.845 42.533
{cg arg a 180}5.466 24.943 43.449
{cd arg a 180}6.435 24.40 44.491
{ne arg a 180}7.628 23.823 43.883
{cz arg a 180}8.672 23.369 44.570
{nh1 arg a 180}8.675 23.423 45.893
{cz arg a 180}P 8.672 23.369 44.570
{nh2 arg a 180}9.711 22.847 43.930
@vectorlist {sc Zn} color= sky master= {Zn site}
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{cb cys a 165}5.986 23.719 31.891
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@balllist {Zn 3} color= gray master= {Zn site} radius= .400
{Zn zn 203}6.82 26.647 32.392
@vectorlist {Zn bonds} color= hotpink master= {Zn site}
{sg cys a 165}P U 5.628 25.711 32.049
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{sg cys a 168}P U 8.011 26.525 31.566
{Zn zn 203}U 7.393 26.588 31.995
{ne2 his a 185}P U 6.24 27.89 32.518
{Zn zn 203}U 6.525 27.279 32.456
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{Zn zn 203}U 7.02 26.428 33.026
@group {DNA}
@subgroup {chain 1} dominant
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{ND1 HIS149} sea 5.855 10.321 47.140
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@vectorlist {x} color= sky master= {small overlap}
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@dotlist {x} color= sky master= {H-bonds}
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@dotlist {x} color= red master= {close contact}
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@dotlist {x} color= red master= {H-bonds}
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{"}P yellow 3.255 11.107 48.927
{"} yellow 3.221 11.152 48.935
{"}P yellowtint 3.036 10.972 48.922
{"} yellowtint 3.021 11.002 48.926
{"}P yellowtint 3.451 11.275 49.193
{"} yellowtint 3.447 11.279 49.193
{"}P yellowtint 3.262 11.101 49.186
{"} yellowtint 3.246 11.122 49.184
{"}P yellowtint 3.044 10.964 49.180
{"} yellowtint 3.041 10.97 49.179
{"}P orange 3.078 11.178 48.435
{"} orange 3.031 11.252 48.483
@dotlist {x} color= red master= {H-bonds}
{O2P G4} greentint 14.556 9.885 46.128
{"} greentint 14.30 9.867 46.127
{"} greentint 14.814 9.777 46.315
{"} greentint 14.566 9.701 46.311
{"} greentint 14.307 9.684 46.310
{"} greentint 14.052 9.727 46.312
{"} greentint 15.027 9.727 46.532
{"} greentint 14.799 9.615 46.527
{"} greentint 14.554 9.552 46.525
{"} greentint 14.301 9.539 46.524
{"} greentint 14.05 9.577 46.526
{"} greentint 13.812 9.665 46.529
{"} greentint 15.152 9.688 46.772
{"} greentint 14.931 9.558 46.766
{"} greentint 14.689 9.473 46.762
{"} greentint 14.436 9.435 46.761
{"} greentint 14.18 9.446 46.761
{"} greentint 13.931 9.505 46.764
{"} greentint 13.698 9.61 46.768
{"} greentint 15.204 9.656 47.024
{"} greentint 14.985 9.521 47.019
{"} greentint 14.745 9.428 47.014
{"} greentint 14.493 9.381 47.012
{"} greentint 14.235 9.381 47.012
{"} greentint 13.983 9.428 47.014
{"} greentint 13.743 9.521 47.019
{"} greentint 14.993 9.513 47.277
{"} greentint 14.753 9.419 47.273
{"} greentint 14.501 9.37 47.271
{"} greentint 14.244 9.369 47.270
{"} greentint 13.99 9.415 47.272
{O2P G6} greentint 5.788 7.114 54.185
{"} greentint 5.601 6.934 54.177
{"} greentint 5.377 6.803 54.172
{"} greentint 5.129 6.727 54.168
{"} greentint 5.956 7.10 54.404
{"} greentint 5.79 6.908 54.396
{"} greentint 5.59 6.753 54.389
{"} greentint 5.362 6.641 54.384
{"} greentint 5.117 6.578 54.382
{"} greentint 4.864 6.565 54.381
{"} greentint 6.064 7.084 54.645
{"} greentint 5.907 6.882 54.636
{"} greentint 5.715 6.714 54.629
{"} greentint 5.494 6.584 54.623
{"} greentint 5.252 6.499 54.619
{"} greentint 4.999 6.461 54.618
{"} greentint 6.112 7.06 54.898
{"} greentint 5.957 6.855 54.889
{"} greentint 5.767 6.682 54.881
{"} greentint 5.548 6.547 54.876
{"} greentint 5.308 6.454 54.871
{"} greentint 5.056 6.407 54.869
{"} greentint 5.963 6.85 55.147
{"} greentint 5.774 6.676 55.140
{"} greentint 5.556 6.539 55.134
{"} greentint 5.316 6.445 55.130
{"} greentint 5.064 6.396 55.128
{"} greentint 5.486 6.548 55.388
{O6 G7} greentint .155 9.415 48.316
{"} greentint .397 9.556 48.576
{"} greentint .207 9.383 48.568
{"} greentint -0.012 9.248 48.563
{"} greentint -0.252 9.155 48.558
{"} greentint .557 9.757 48.843
{"} greentint .403 9.551 48.834
{"} greentint .214 9.377 48.827
{"} greentint -0.004 9.24 48.821
{"} greentint -0.244 9.146 48.817
{"} greentint -0.496 9.097 48.815
{"} greentint .50 9.745 49.097
{"} greentint .342 9.544 49.088
{"} greentint .148 9.376 49.081
{"} greentint -0.074 9.249 49.075
{"} greentint -0.316 9.165 49.072
{"} greentint -0.569 9.129 49.070
{"} greentint .522 9.975 49.348
{"} greentint .40 9.753 49.338
{"} greentint .236 9.56 49.330
{"} greentint .037 9.404 49.323
{"} greentint -0.19 9.291 49.318
{"} greentint -0.435 9.225 49.315
{"} greentint .223 9.735 49.558
{"} greentint .034 9.557 49.550
{"} greentint -0.19 9.427 49.544
{"} greentint -0.439 9.353 49.541
{"} greentint .017 9.761 49.750
{"} greentint -0.192 9.611 49.743
@dotlist {x} color= pink master= {wide contact}
{P C3} sky 15.502 13.522 42.095
{"} sky 14.27 13.975 42.622
{"} blue 15.754 13.487 43.109
{"} sky 15.502 13.478 43.108
{"} blue 15.573 13.556 43.353
{"} sky 15.317 13.574 43.353
{"} sky 15.067 13.633 43.356
{P T5} blue 12.963 9.605 53.318
{"} blue 13.001 9.349 53.558
{"} blue 12.998 9.855 53.580
{"} blue 13.018 9.602 53.569
{"} blue 13.018 9.333 53.814
{"} blue 12.966 9.087 53.803
{"} blue 13.036 9.583 53.825
{"} blue 13.001 9.327 54.070
{"} blue 12.948 9.078 54.059
{"} blue 13.018 9.58 54.081
@dotlist {x} color= pink master= {close contact}
{P C3} sea 15.251 13.549 42.096
{"} green 15.007 13.613 42.099
{"} green 14.775 13.712 42.103
{"} sea 14.56 13.843 42.109
{"} sea 15.573 13.455 42.343
{"} green 15.319 13.472 42.344
{"} green 14.609 13.733 42.356
{"} sea 14.404 13.885 42.362
{"} sea 15.628 13.427 42.599
{"} green 15.377 13.436 42.599
{"} green 14.457 13.807 42.615
{"} sea 15.573 13.433 42.855
{"} green 15.319 13.45 42.856
{"} green 14.609 13.711 42.867
{"} sea 14.404 13.862 42.874
{"} green 15.251 13.505 43.110
{"} green 15.007 13.569 43.112
{"} green 14.775 13.667 43.117
{"} sea 14.56 13.799 43.122
@vectorlist {x} color= pink master= {small overlap}
{P C3}P yellowtint 15.071 13.525 42.346
{"} yellowtint 15.072 13.529 42.347
{"}P yellowtint 14.832 13.613 42.350
{"} yellowtint 14.835 13.62 42.352
{"}P yellowtint 15.13 13.479 42.601
{"} yellowtint 15.135 13.502 42.602
{"}P yellowtint 14.891 13.557 42.604
{"} yellowtint 14.905 13.593 42.606
{"}P yellowtint 14.665 13.667 42.609
{"} yellowtint 14.67 13.675 42.609
{"}P yellowtint 15.071 13.503 42.858
{"} yellowtint 15.074 13.514 42.857
{"}P yellowtint 14.832 13.59 42.862
{"} yellowtint 14.839 13.605 42.860

@kinemage 3
@caption (B&T Fig. 10.9-10.11)
Dimer of glucocorticoid receptor bound to DNA - regions in each monomer are color-coded as in Fig. 10.9, with the 1st Zn region red, linker blue, 2nd Zn region green, and dimer loop purple. (from PDB file 1GLU)
@onewidth
@viewid {Fig. 10.10}
@zoom 1.29
@zslab 200
@center -6.397 9.773 9.6
@matrix
0.133608 .07441 .988237 .982367 .121649 -.141973 -.130782 .989781 -.056844
@2viewid {end}
@2zoom 1.49
@2zslab 200
@2center -6.397 9.773 7.51
@2matrix
0.996117 .078456 .039951 -.081782 .992592 .089844 -.032607 -.092762 .995154
@3viewid {Fig. 10.9}
@3zoom 2.08
@3zslab 180
@3center -5.654 16.729 22.715
@3matrix
-0.587503 .651712 -.4797 .728759 .168408 -.663739 -.35178 -.739534 -.573882
@4viewid {down helix}
@4zoom 3.25
@4zslab 180
@4center -2.256 14.383 23.777
@4matrix
-0.04501 -.181063 -.982441 .972762 -.2318 -.001846 -.227394 -.955765 .186565
@5viewid {dimer loops}
@5zoom 2.08
@5zslab 90
@5center -7.002 20.926 7.88
@5matrix
-0.858396 -.485098 .166842 .109978 .143649 .983499 -.50106 .862581 -.069958
@master {Zn}
@master {contact}
@group {GluCort a} dominant
@vectorlist {Zn region 1} color= red
{ca met a 434}P -16.595 27.43 38.415
{ca lys a 435}-14.044 24.909 37.461
{ca pro a 436}-14.655 21.444 36.482
{ca ala a 437}-16.90 22.07 33.431
{ca arg a 438}-18.173 19.606 30.652
{ca pro a 439}-16.183 21.268 27.659
{ca cys a 440}-12.816 19.936 26.517
{ca leu a 441}-10.40 22.855 26.669
{ca val a 442}-8.998 22.032 23.255
{ca cys a 443}-11.814 20.591 21.188
{ca ser a 444}-14.824 21.357 23.377
{ca asp a 445}-16.209 17.773 23.417
{ca glu a 446}-17.237 16.067 26.708
{ca ala a 447}-14.123 16.293 28.870
{ca ser a 448}-13.492 13.28 31.091
{ca gly a 449}-11.359 14.838 33.849
{ca cys a 450}-8.021 16.538 34.399
{ca his a 451}-6.093 14.731 31.622
{ca tyr a 452}-2.402 15.672 31.532
{ca gly a 453}-2.889 19.043 33.239
{ca val a 454}-6.10 20.167 31.605
{ca leu a 455}-9.786 19.388 31.724
{ca thr a 456}-10.093 17.359 28.476
{ca cys a 457}-11.361 14.281 26.606
{ca gly a 458}-10.193 10.724 25.989
{ca ser a 459}-9.197 11.537 22.357
{ca cys a 460}-7.094 14.597 23.140
{ca lys a 461}-5.889 12.868 26.339
{ca val a 462}-4.539 10.09 24.219
{ca phe a 463}-3.558 12.408 21.386
{ca phe a 464}-1.274 14.385 23.590
{ca lys a 465}0.846 11.502 24.897
{ca arg a 466}1.073 9.92 21.456
{ca ala a 467}1.996 13.329 20.059
{ca val a 468}4.805 14.07 22.517
{ca glu a 469}6.635 10.746 22.320
{ca gly a 470}6.052 9.478 18.767
@vectorlist {linker} color= sky
{ca gly a 470}P 6.052 9.478 18.767
{ca gln a 471}7.358 10.222 15.274
{ca his a 472}4.954 12.205 13.071
{ca asn a 473}4.64 14.521 10.039
{ca tyr a 474}2.321 16.937 11.459
{ca leu a 475}2.04 19.854 9.088
@vectorlist {dimer loop} color= purple
{ca cys a 476}P -0.736 22.337 8.846
{ca ala a 477}-2.27 23.154 5.528
{ca gly a 478}-3.266 26.747 6.419
{ca arg a 479}-1.311 29.228 8.530
{ca asn a 480}-1.241 27.45 11.882
{ca asp a 481}-4.493 28.629 13.551
{ca cys a 482}-7.14 26.121 12.530
@vectorlist {Zn region 2} color= sea
{ca leu a 475}P 2.04 19.854 9.088
{ca cys a 476}-0.736 22.337 8.846
{ca cys a 482}P -7.14 26.121 12.530
{ca ile a 483}-10.193 25.738 14.663
{ca ile a 484}-10.02 22.451 16.672
{ca asp a 485}-13.557 21.05 17.280
{ca lys a 486}-15.238 17.676 17.762
{ca ile a 487}-14.911 17.175 13.966
{ca arg a 488}-12.151 19.401 12.568
{ca arg a 489}-9.702 18.17 15.213
{ca lys a 490}-8.744 15.369 12.801
{ca asn a 491}-7.961 17.958 10.135
{ca cys a 492}-4.951 19.649 11.720
{ca pro a 493}-3.241 17.491 14.280
{ca ala a 494}-0.41 20.035 13.908
{ca cys a 495}-2.793 22.644 15.163
{ca arg a 496}-4.303 20.369 17.861
{ca tyr a 497}-0.91 19.497 19.302
{ca arg a 498}-0.201 23.266 19.359
{ca lys a 499}-3.581 23.868 21.073
{ca cys a 500}-2.464 21.093 23.477
{ca leu a 501}0.894 22.706 24.324
{ca gln a 502}-1.036 26.062 24.526
{ca ala a 503}-3.545 24.886 27.149
{ca gly a 504}-0.898 23.515 29.558
{ca met a 505}-1.019 19.752 28.943
{ca asn a 506}2.28 18.463 30.310
{ca leu a 507}3.411 14.854 30.194
{ca glu a 508}5.61 14.638 33.296
{ca ala a 509}3.025 16.627 35.189
{ca arg a 510}1.107 16.912 38.470
{ca lys a 511}-1.459 14.054 38.346
{ca thr a 512}-4.662 15.498 39.831
{ca lys a 513}-8.098 16.818 39.922
{ca lys a 514}-10.565 14.96 42.202
@balllist {S} color= yellow master= {Zn} radius= .200
{sg cys a 440}-10.945 18.667 24.941
{sg cys a 443}-12.18 17.888 21.475
{sg cys a 457}-11.764 15.055 23.906
{sg cys a 460}-8.705 16.773 22.538
@vectorlist {Zn sc} color= pink master= {Zn}
{ca cys a 440}P -12.816 19.936 26.517
{cb cys a 440}-12.715 18.97 25.341
{sg cys a 440}-10.945 18.667 24.941
{ca cys a 443}P -11.814 20.591 21.188
{cb cys a 443}-11.293 19.239 20.729
{sg cys a 443}-12.18 17.888 21.475
{ca cys a 457}P -11.361 14.281 26.606
{cb cys a 457}-12.392 14.348 25.497
{sg cys a 457}-11.764 15.055 23.906
{ca cys a 460}P -7.094 14.597 23.140
{cb cys a 460}-7.60 15.943 23.624
{sg cys a 460}-8.705 16.773 22.538
@vectorlist {Drawn} color= hotpink master= {Zn}
{sg cys a 460}P U -9.356 16.881 22.773
{Zn zn a 515}U -10.204 17.023 23.078
{sg cys a 443}P U -11.792 17.666 22.014
{Zn zn a 515}U -11.243 17.353 22.774
{sg cys a 440}P U -10.917 18.187 24.432
{Zn zn a 515}U -10.883 17.611 23.822
{sg cys a 457}P U -11.492 15.675 23.729
{Zn zn a 515}U -11.127 16.511 23.490
@balllist {N} color= blue master= {contact} radius= .150
{nz lys a 461}-6.546 8.50 29.552
{ne arg a 466}-2.659 6.716 21.213
{nh1 arg a 466}-3.273 4.602 20.359
{nh2 arg a 466}-4.841 6.155 20.540
@vectorlist {DNA sc} color= pink master= {contact}
{ca lys a 461}P -5.889 12.868 26.339
{cb lys a 461}-6.781 12.065 27.257
{cg lys a 461}-6.375 11.686 28.680
{cd lys a 461}-5.397 10.533 28.718
{ce lys a 461}-5.559 9.576 29.863
{nz lys a 461}-6.546 8.50 29.552
{ca val a 462}P -4.539 10.09 24.219
{cb val a 462}-5.299 9.005 23.463
{cg1 val a 462}-4.513 7.698 23.593
{cb val a 462}P -5.299 9.005 23.463
{cg2 val a 462}-6.753 8.803 23.836
{ca arg a 466}P 1.073 9.92 21.456
{cb arg a 466}-0.145 9.272 20.777
{cg arg a 466}-0.435 7.866 21.323
{cd arg a 466}-1.427 7.045 20.487
{ne arg a 466}-2.659 6.716 21.213
{cz arg a 466}-3.586 5.817 20.833
{nh1 arg a 466}-3.273 4.602 20.359
{cz arg a 466}P -3.586 5.817 20.833
{nh2 arg a 466}-4.841 6.155 20.540
@vectorlist {Drawn} color= purple master= {contact}
{nh2 arg a 466} P U -5.388, 6.155, 20.451
{n7 g c 4} U -6.775, 6.230, 20.207
{nh1 arg a 466} P U -3.925, 4.351, 20.396
{o6 g c 4} U -5.377, 3.791, 20.478
@balllist {S} color= yellow master= {Zn} radius= .200
{sg cys a 476}-1.95 24.804 9.559
{sg cys a 482}-5.496 24.80 10.685
{sg cys a 492}-3.314 21.726 11.254
{sg cys a 495}-2.903 24.735 13.425
@vectorlist {Zn sc} color= greentint master= {Zn}
{ca cys a 476}P -0.736 22.337 8.846
{cb cys a 476}-0.855 23.365 9.974
{sg cys a 476}-1.95 24.804 9.559
{ca cys a 482}P -7.14 26.121 12.530
{cb cys a 482}-7.021 24.867 11.671
{sg cys a 482}-5.496 24.80 10.685
{ca cys a 492}P -4.951 19.649 11.720
{cb cys a 492}-4.995 21.187 11.664
{sg cys a 492}-3.314 21.726 11.254
{ca cys a 495}P -2.793 22.644 15.163
{cb cys a 495}-3.774 23.365 14.271
{sg cys a 495}-2.903 24.735 13.425
@vectorlist {Drawn} color= green master= {Zn}
{sg cys a 476}P U -2.417 24.566 10.023
{Zn zn a 516}U -3.097 24.218 10.697
{sg cys a 482}P U -4.868 24.533 10.840
{Zn zn a 516}U -4.192 24.247 11.006
{sg cys a 492}P U -3.391 22.421 11.225
{Zn zn a 516}U -3.487 23.285 11.190
{sg cys a 495}P U -3.09 24.522 12.785
{Zn zn a 516}U -3.377 24.193 11.801
@balllist {Zn} color= gray master= {Zn} radius= .400
{Zn zn a 515}-10.855 17.131 23.313
{Zn zn a 516}-3.564 23.98 11.161
@group {GluCort b} dominant
@subgroup {} nobutton
@vectorlist {Zn region 1} color= pinktint
{ca met b 434}P 14.344 8.716 -11.454
{ca lys b 435}10.944 9.499 -12.935
{ca pro b 436}10.551 12.918 -14.542
{ca ala b 437}7.237 14.401 -13.530
{ca arg b 438}3.755 15.338 -14.673
{ca pro b 439}1.892 16.57 -11.572
{ca cys b 440}-1.737 16.021 -10.899
{ca leu b 441}-3.954 19.072 -11.517
{ca val b 442}-5.192 19.114 -7.847
{ca cys b 443}-2.451 17.848 -5.545
{ca ser b 444}0.904 17.66 -7.128
{ca asp b 445}1.676 13.978 -6.919
{ca glu b 446}2.906 12.099 -9.987
{ca ala b 447}-0.378 11.887 -12.000
{ca ser b 448}-1.604 8.56 -13.395
{ca gly b 449}-3.971 9.466 -16.255
{ca cys b 450}-6.964 11.636 -17.042
{ca his b 451}-9.45 11.105 -14.238
{ca tyr b 452}-12.997 12.28 -14.461
{ca gly b 453}-11.651 14.819 -16.873
{ca val b 454}-8.415 16.103 -15.342
{ca leu b 455}-4.861 14.829 -15.130
{ca thr b 456}-4.981 13.598 -11.487
{ca cys b 457}-3.253 10.864 -9.494
{ca gly b 458}-4.83 7.71 -8.219
{ca ser b 459}-5.977 9.173 -4.908
{ca cys b 460}-7.521 12.333 -6.378
{ca lys b 461}-9.262 9.847 -8.677
{ca val b 462}-11.21 7.91 -6.012
{ca phe b 463}-11.323 10.729 -3.484
{ca phe b 464}-13.373 12.831 -5.880
{ca lys b 465}-15.556 9.88 -6.888
{ca arg b 466}-16.40 8.981 -3.279
{ca ala b 467}-16.962 12.655 -2.414
{ca val b 468}-19.246 13.262 -5.371
{ca glu b 469}-21.257 10.141 -4.895
{ca gly b 470}-22.957 11.808 -1.952
@vectorlist {linker} color= bluetint
{ca gly b 470}P -22.957 11.808 -1.952
{ca gln b 471}-22.644 13.696 1.290
{ca his b 472}-19.653 16.014 .858
{ca asn b 473}-20.501 18.086 3.953
{ca tyr b 474}-17.127 18.887 5.392
{ca leu b 475}-15.989 21.948 7.229
@vectorlist {dimer loop} color= purple
{ca cys b 476}P -12.698 23.651 6.674
{ca ala b 477}-10.518 24.305 9.770
{ca gly b 478}-8.913 27.29 8.042
{ca arg b 479}-10.145 30.15 5.954
{ca asn b 480}-11.244 28.159 2.967
{ca asp b 481}-7.92 28.119 1.175
{ca cys b 482}-5.629 25.27 2.291
@vectorlist {Zn region 2} color= greentint
{ca leu b 475}P -15.989 21.948 7.229
{ca cys b 476}-12.698 23.651 6.674
{ca cys b 482}P -5.629 25.27 2.291
{ca ile b 483}-2.35 24.485 .420
{ca ile b 484}-1.894 20.93 -0.981
{ca asp b 485}0.507 18.144 -1.724
{ca lys b 486}1.489 14.537 -1.321
{ca ile b 487}0.924 15.09 2.488
{ca arg b 488}-1.283 18.105 3.276
{ca arg b 489}-3.87 16.686 .838
{ca lys b 490}-5.383 14.329 3.393
{ca asn b 491}-5.661 17.26 5.884
{ca cys b 492}-8.812 18.947 4.469
{ca pro b 493}-11.281 17.116 2.307
{ca ala b 494}-13.418 20.319 2.139
{ca cys b 495}-10.72 22.158 .257
{ca arg b 496}-9.565 19.133 -1.799
{ca tyr b 497}-13.104 18.606 -2.996
{ca arg b 498}-13.154 22.239 -3.961
{ca lys b 499}-9.905 21.902 -5.849
{ca cys b 500}-11.342 18.936 -7.760
{ca leu b 501}-14.388 20.908 -8.782
{ca gln b 502}-12.068 23.735 -9.916
{ca ala b 503}-9.696 21.629 -11.979
{ca gly b 504}-12.767 20.571 -13.950
{ca met b 505}-13.314 17.047 -12.584
{ca asn b 506}-16.917 16.053 -13.391
{ca leu b 507}-18.753 12.808 -13.198
{ca glu b 508}-19.496 12.019 -16.877
{ca ala b 509}-16.161 13.149 -18.277
{ca arg b 510}-15.208 10.427 -20.669
{ca lys b 511}-18.825 10.236 -21.859
{ca thr b 512}-18.248 13.311 -23.948
{ca lys b 513}-14.481 13.924 -23.889
{ca lys b 514}-14.08 15.781 -27.181
@balllist {N} color= blue master= {contact} radius= .150
{nz lys a 461}-11.22 4.807 -10.253
{ne arg a 466}-13.607 7.276 -0.144
{nh1 arg a 466}-11.736 8.715 -0.142
{nh2 arg a 466}-11.579 6.727 -1.178
@vectorlist {DNA sc} color= pink master= {contact}
{ca lys a 461}P -9.262 9.847 -8.677
{cb lys a 461}-8.618 8.571 -9.271
{cg lys a 461}-9.439 7.73 -10.241
{cd lys a 461}-9.108 6.273 -10.346
{ce lys a 461}-10.045 5.335 -11.046
{nz lys a 461}-11.22 4.807 -10.253
{ca val a 462}P -11.21 7.91 -6.012
{cb val a 462}-10.893 6.526 -5.464
{cg1 val a 462}-9.546 6.395 -4.784
{cb val a 462}P -10.893 6.526 -5.464
{cg2 val a 462}-12.02 6.157 -4.481
{ca arg a 466}P -16.40 8.981 -3.279
{cb arg a 466}-15.389 8.245 -2.391
{cg arg a 466}-15.827 8.113 -0.931
{cd arg a 466}-14.67 8.243 .070
{ne arg a 466}-13.607 7.276 -0.144
{cz arg a 466}-12.325 7.545 -0.440
{nh1 arg a 466}-11.736 8.715 -0.142
{cz arg a 466}P -12.325 7.545 -0.440
{nh2 arg a 466}-11.579 6.727 -1.178
@balllist {Zn} color= gray master= {Zn} radius= .400
{Zn zn b 515}-3.903 14.191 -6.679
{Zn zn b 516}-9.462 23.771 4.097
@group {DNA}
@subgroup {chain 1} dominant
@vectorlist {bb 1} color= yellowtint
{c4* c c -10}P -4.799 5.115 -22.428
{c1* c c -10}-6.702 3.766 -22.096
{c4* c c -10}P -4.799 5.115 -22.428
{p c c -9}-6.092 7.213 -19.218
{c4* c c -9}-9.31 7.158 -18.798
{c1* c c -9}-9.889 5.027 -18.180
{c4* c c -9}P -9.31 7.158 -18.798
{p a c -8}-11.864 7.49 -15.790
{c4* a c -8}-15.135 5.653 -15.355
{c1* a c -8}-14.19 3.548 -14.851
{c4* a c -8}P -15.135 5.653 -15.355
{p g c -7}-17.703 5.216 -12.806
{c4* g c -7}-16.864 2.203 -11.581
{c1* g c -7}-14.959 1.263 -10.817
{c4* g c -7}P -16.864 2.203 -11.581
{p a c -6}-18.185 .649 -8.273
{c4* a c -6}-17.128 -2.349 -7.787
{c1* a c -6}-14.836 -2