@text Second Edition Kinemage Supplement to Branden & Tooze "Introduction to Protein Structure" Chapter 7 - DNA STRUCTURES Contents of file C7DNA.KIN: *{Kin 1}* DNA base pairs (A-T, G-C), with H-bonds & atom balls (Fig. 7.4-7.7) *{Kin 2}* B form DNA duplex, 12 base pairs (Fig. 7.1, 7,2a) *{Kin 3}* A form DNA duplex, 8 base pairs (Fig. 7.2b) *{Kin 4}* Z form lefthanded DNA duplex, 10 base pairs (Fig. 7.2c) *{Kin 5}* Tyr tRNA, with the 4 stem-loops, modified bases, & tertiary Hbonds *{Kinemage 1}* shows the Watson-Crick base-pairing arrangement, for one A-T pair and one G-C pair in B-DNA conformation. The non-C, non-H atoms are marked with color-coded balls: O in red, N in blue, and P in yellowtint (H atoms are shown only for bases). Here and in the other kinemages, the bases are color-coded as G (guanine) seagreen, C (cytosine) yellow, A (adenine) pink, and T or U (thymine, or uridine in RNA) skyblue; the sugar-phosphate backbone is in white. The base-pair hydrogen bonds are shown in purple: two for the A-T pair and three for the G-C pair. The two bases of a pair lie in very nearly but not precisely the same plane (animate to View2 and tilt to line up each base); the commonest distortion is a torsional twist between the two bases, called "propeller twist". Adjacent base pairs are also very nearly parallel to each other, with parts of their aromatic rings stacked in van der Waals contact (a separation of about 3.5A). This base-stacking interaction is quite important, as well as the base-pair H-bonds, in making double-helix conformations of DNA very favorable. Notice that DNA is an electrostatically rich macromolecule: the phosphates of the backbone are negatively charged, and there are several potential H-bonding sites on the sides of each base, in addition to the ones that form the base-pair H-bonds. Waters and counter-ions interact strongly with DNA, and proteins can interact non-specifically with the charged backbone. Animate again to see each of the base pairs isolated. The 4 major-groove recognition sites on the edge of each base pair are labeled: as H-bond donors, H-bond acceptors, hydrogen atoms, or methyl groups. Since each list of types is asymmetrical, the arrangement of those recognition sites as seen looking into the major groove is distinct for each of the four base-pair types (GC, CG, AT, or TA). *{Kinemage 2}* shows a 12-base-pair duplex of B-form DNA, which is by far the most common conformation of DNA under biological conditions. Each strand here has the sequence CGCGAATTCGCG, which makes a completely self-complementary double helix. There are 4 A-T pairs in the center (pink & blue) and 4 G-C pairs at each end (green & yellow). Choose View2 to look from one end of the double helix; the sugar-phosphate backbone is at the outside and the bases near the center. The double helix is righthanded, with the strands antiparallel and about 11 base pairs per turn. Each base and each unit of the backbone has approximately the same conformation, although minor variations can be important to DNA bending, stability, and recognition. Choose View3 to look along the major groove (at the right-hand side), which gives DNA-binding proteins access to the H-bonding recognition sites on the edges of the base-pairs, as shown in Kin. 1. Choose View4 to look along the minor groove (at the left-hand side); it not only has less specific Hbonding groups on the base edges, but is also narrower and less accessible to binding proteins. Small-molecule drugs can bind in either groove, and some of them can also interact by "intercalating": sliding between adjacent base-pairs and pushing them apart. *{Kinemage 3}* shows an 8-base-pair duplex of A form DNA. DNA adopts the A conformation only under non-physiological conditions, but it is the most common conformation for RNA (e.g., much of the tRNA in Kin. 5). The A double helix is righthanded and antiparallel, with about 10 base pairs per turn. This example has two identical (self-complementary) strands, with the sequence GGGATCCC. In A form, the base pairs are significantly tilted rather than perpendicular to the helix axis, and the sugar rings lie approximately in the plane of the outer helix cylinder, rather than radially as in B DNA. Choose View2 to look from one end, showing that the A-DNA base-pairs do not pass across the central axis of the double helix. The major groove (at right in View3) is quite wide and deep, and the minor groove (at left in View4) quite shallow. *{Kinemage 4}* shows the Z form of DNA, which occurs under biological conditions in vitro for some sequences (such as repeating CGCG), although whether or not it occurs in cells is uncertain. In this case, the Z conformation was stabilized by demethylation, and the 6-base-pair duplex of the crystal structure was here artificially lengthened by superposition onto itself, in order to show the Z structure more clearly. Z DNA is quite dramatically different from A or B form - the Z double helix is left-handed, and alternate residues have quite different conformations (sugar out and backbone extended, vs sugar in and backbone curled), giving the overall backbone a zigzag path (from which the name comes). Each base pair has one end with sugar out and the other end with sugar in. The helix is somewhat thinner and more elongated than for A or B. View2 looks from one end of the Z double helix, showing that the bases lie almost at the outside. View3 is a close-up of a section of Z DNA backbone, to show how different the conformations are for every other residue: on this strand the even residues are nearly extended and on the outside, while the odd residues are curled up and much further toward the middle. View4 is another close-up, this time to emphasize the alternating in-and-out positions of adjacent bases. Choose View5 and turn on "labels". This looks along what would be the major groove of the Z DNA (on the right side), but the bases are so far toward the outside that there is no groove. View6 looks along the minor groove, which is deep and narrow. *{Kinemage 5}* shows Tyr transfer RNA (tRNA), the first large RNA structure to be known in detail. As opposed to the repeating double helices formed by DNA, RNA structure is much more complex and varied, with regions of double-helical secondary structure but also with tertiary-structure interactions somewhat reminiscent of those in proteins. tRNA has a large number of its bases altered by post-translational modifications; turn off the "std bases" button to see just the modified bases, which are colored in darker shades of the standard base color-code. The largest modification is the green "Y base" next to the anticodon; several well-conserved modified bases give their names to two of the loops (see below). tRNA is made up of three stem-loop hairpins and a fourth double-helical stem formed by the two chain termini. Click repeatedly on the "animate" button to cycle through highlighting each of the four stem-loops as they occur in the overall tRNA structure. When diagrammed in two dimensions, this arrangement forms what is called a "cloverleaf" pattern; the 4 sections are called the CCA stem, the dhU (dihydro-U) stem-loop, the anticodon stem-loop, and the psUC (pseudo-U,C) stem-loop. In 3 dimensions, however, tRNA is a long, L-shaped molecule, with the anticodon at the far bottom end in the startup view, and the CCA amino-acid acceptor site at the opposite (top right) end. Each branch of the L is made up of two stem-loops stacked into a single co-axial A form double helix, with a loop (or the termini) at each end. One of the strands continues straight through between stems and base-pair stacking is continuous, but the second strand is discontinuous at the middle where it connects to the other half of the molecule. The two double-helical sections pack perpendicular to each other, with the dhU and psUC loops interacting closely at the corner and covalent connections joining the two middles. Click repeatedly on the "2animate" button for a tour of features in the tRNA structure. First one looks down one of the double-helical sections from the CCA end. Then there is a close-up of each of the stem-loops in turn, with only its bases shown. Then there is a close-up of a set of tertiary interactions (purple H-bonds) between stems, where three bases H-bond in a plane rather than just two. Finally, there is a close-up of the tertiary interactions between the dhU and the psUC loops that holds together the corner of the L shape; note the single-strand base-stacking in parts of the loops and the outer GC base pair between loops. Copyright 1999 Jane S. and David C. Richardson. Permission freely granted for educational, research, and personal use. For program updates and more information, see http://kinemage.biochem.duke.edu. @kinemage 1 @caption (B&T Fig. 7.4, 7.6, 7.7) Animated tour of DNA base pairs (B form) - one G-C and one A-T pair, with sugar-phosphate backbone (white), base-pair H-bonds (purple), and non-C atoms marked with colored balls (red O, blue N, and yellow P); H atoms (gray) are shown only on bases. The bases are color-coded: G seagreen, C yellow, A pink, and T skyblue. (from PDB file 2BNA) @onewidth @zoom 1.18 @zslab 150 @center 14.695 20.444 13.115 @matrix 0.647461 -0.743479 0.167427 0.685604 0.664172 0.298025 -0.332783 -0.078163 0.939760 @2viewid {side} @2zoom 1.31 @2zslab 130 @2center 14.628 20.468 14.15 @2matrix 0.51994 -.57786 .62908 -.63614 .22956 .73664 -.57008 -.78319 -.24824 @3viewid {GC only} @3zoom 1.42 @3zslab 80 @3center 15.647 21.644 18.157 @3matrix 0.373240 0.920079 -0.118934 0.886176 -0.391517 -0.247794 -0.274559 -0.012919 -0.961485 @4viewid {AT only} @4zoom 1.42 @4zslab 80 @4center 14.274 20.759 11.897 @4matrix 0.884303 -0.460863 0.074921 0.440903 0.877027 0.190845 -0.153670 -0.135728 0.978758 @group {2 b pr, top} animate moview= 1 @subgroup {DNA a str} dominant @balllist {mc O} color= red radius= .2 {o3* c a 3} 23.36 19.464 18.717 {o1p g a 4} 23.427 19.617 16.175 {o2p g a 4} 24.895 17.978 17.377 {o5* g a 4} 22.405 17.628 17.363 {o4* g a 4} 19.672 17.243 18.381 {o3* g a 4} 19.884 14.234 17.37 {o1p a a 5} 20.176 13.56 14.91 {o2p a a 5} 20.452 11.905 16.759 {o5* a a 5} 18.176 12.817 16.216 {o4* a a 5} 15.788 15.005 16.486 {o3* a a 5} 14.06 12.283 16.021 @balllist {mc P} color= yellow radius= .3 {p g a 4} 23.59 18.696 17.329 {p a a 5} 19.756 13.088 16.256 @vectorlist {mc} color= white {o1p g a 4}P 23.427 19.617 16.175 {p g a 4} 23.59 18.696 17.329 {o2p g a 4} 24.895 17.978 17.377 {o3* c a 3}P 23.36 19.464 18.717 {p g a 4} 23.59 18.696 17.329 {o5* g a 4} 22.405 17.628 17.363 {c5* g a 4} 22.066 16.97 18.609 {c4* g a 4} 20.744 16.272 18.416 {o4* g a 4} 19.672 17.243 18.381 {c4* g a 4} P 20.744 16.272 18.416 {c3* g a 4} 20.623 15.447 17.145 {o3* g a 4} 19.884 14.234 17.37 {c3* g a 4} P 20.623 15.447 17.145 {c2* g a 4} 19.954 16.437 16.183 {o4* g a 4} P 19.672 17.243 18.381 {c1* g a 4} 19. 17.157 17.12 {c2* g a 4} 19.954 16.437 16.183 {o3* g a 4} P 19.884 14.234 17.37 {p a a 5} 19.756 13.088 16.256 {o1p a a 5} 20.176 13.56 14.91 {p a a 5} P 19.756 13.088 16.256 {o2p a a 5} 20.452 11.905 16.759 {p a a 5} P 19.756 13.088 16.256 {o5* a a 5} 18.176 12.817 16.216 {c5* a a 5} 17.341 13.294 17.289 {c4* a a 5} 15.942 13.614 16.797 {o4* a a 5} 15.788 15.005 16.486 {c4* a a 5} P 15.942 13.614 16.797 {c3* a a 5} 15.339 12.809 15.654 {o3* a a 5} 14.06 12.283 16.021 {c3* a a 5} P 15.339 12.809 15.654 {c2* a a 5} 15.283 13.84 14.513 {o4* a a 5} P 15.788 15.005 16.486 {c1* a a 5} 15.044 15.138 15.261 {c2* a a 5} 15.283 13.84 14.513 @subgroup {DNA b str} dominant @balllist {mco} color= red radius= .2 {o3* t b 7} 9.459 27.285 8.772 {o1p t b 8} 10.039 28.973 10.599 {o2p t b 8} 7.726 28.795 9.678 {o5* t b 8} 8.704 26.87 11.073 {o4* t b 8} 9.334 23.734 11.571 {o3* t b 8} 6.601 23.97 13.377 {o1p c b 9} 6.478 25.34 15.501 {o2p c b 9} 4.63 23.755 14.95 {o5* c b 9} 6.86 22.843 15.555 {o4* c b 9} 8.748 20.947 15.863 {o3* c b 9} 6.376 19.852 18.231 @balllist {mcp} color= yellow radius= .3 {p t b 8} 8.977 28.094 10.069 {p c b 9} 6.073 24.053 14.883 @vectorlist {mc} color= white {o1p t b 8} P 10.039 28.973 10.599 {p t b 8} 8.977 28.094 10.069 {o2p t b 8} 7.726 28.795 9.678 {o3* t b 7}P 9.459 27.285 8.772 {p t b 8} 8.977 28.094 10.069 {o5* t b 8} 8.704 26.87 11.073 {c5* t b 8} 8.263 25.613 10.501 {c4* t b 8} 8.114 24.489 11.504 {o4* t b 8} 9.334 23.734 11.571 {c4* t b 8} P 8.114 24.489 11.504 {c3* t b 8} 7.688 24.807 12.931 {o3* t b 8} 6.601 23.97 13.377 {c3* t b 8} P 7.688 24.807 12.931 {c2* t b 8} 8.974 24.614 13.725 {o4* t b 8} P 9.334 23.734 11.571 {c1* t b 8} 9.633 23.486 12.953 {c2* t b 8} 8.974 24.614 13.725 {o3* t b 8} P 6.601 23.97 13.377 {p c b 9} 6.073 24.053 14.883 {o1p c b 9} 6.478 25.34 15.501 {p c b 9} P 6.073 24.053 14.883 {o2p c b 9} 4.63 23.755 14.95 {p c b 9} P 6.073 24.053 14.883 {o5* c b 9} 6.86 22.843 15.555 {c5* c b 9} 6.638 21.508 15.081 {c4* c b 9} 7.369 20.629 16.056 {o4* c b 9} 8.748 20.947 15.863 {c4* c b 9} P 7.369 20.629 16.056 {c3* c b 9} 7.052 20.936 17.524 {o3* c b 9} 6.376 19.852 18.231 {c3* c b 9} P 7.052 20.936 17.524 {c2* c b 9} 8.382 21.382 18.142 {o4* c b 9} P 8.748 20.947 15.863 {c1* c b 9} 9.425 20.923 17.126 {c2* c b 9} 8.382 21.382 18.142 @subgroup {G-C} dominant @balllist {scn g} color= blue radius= .2 {n9 g a 4} 18.653 18.537 16.727 {n7 g a 4} 18.681 20.702 16.066 {n1 g a 4} 15.196 20.359 17.071 {n2 g a 4} 14.078 18.481 17.858 {n3 g a 4} 16.351 18.329 17.322 @balllist {sco} color= red radius= .2 {o6 g a 4} 16.005 22.279 16.257 @vectorlist {G} color= sea {c1* g a 4} P 19. 17.157 17.12 {n9 g a 4} 18.653 18.537 16.727 {c8 g a 4} 19.399 19.565 16.205 {n7 g a 4} 18.681 20.702 16.066 {c5 g a 4} 17.445 20.357 16.508 {c6 g a 4} 16.234 21.119 16.598 {o6 g a 4} 16.005 22.279 16.257 {c6 g a 4} P 16.234 21.119 16.598 {n1 g a 4} 15.196 20.359 17.071 {c2 g a 4} 15.236 19.043 17.418 {n2 g a 4} 14.078 18.481 17.858 {c2 g a 4} P 15.236 19.043 17.418 {n3 g a 4} 16.351 18.329 17.322 {c4 g a 4} 17.398 19.047 16.88 {c5 g a 4} 17.445 20.357 16.508 {n9 g a 4} P 18.653 18.537 16.727 {c4 g a 4} 17.398 19.047 16.88 {c5 g a 4} 17.445 20.357 16.508 {c4 g a 4} 17.398 19.047 16.88 {c5 g a 4} 17.445 20.357 16.508 {c4 g a 4} P 17.398 19.047 16.88 {n3 g a 4} 16.351 18.329 17.322 @vectorlist {scH G} color= gray master= {H} {n2 g a 4} P 14.078 18.481 17.858 {1hn2 g a 4} 14.059 17.517 18.124 {n2 g a 4} P 14.078 18.481 17.858 {2hn2 g a 4} 13.247 19.034 17.924 {n1 g a 4} P 15.196 20.359 17.071 {hn1 g a 4} 14.319 20.829 17.172 {c8 g a 4} P 19.399 19.565 16.205 {hc8 g a 4} 20.366 19.481 15.964 @balllist {scn c} color= blue radius= .2 {n1 c b 9} 10.609 21.828 16.991 {n3 c b 9} 12.927 22.026 16.78 {n4 c b 9} 13.919 24.099 16.421 @balllist {sco c} color= red radius= .2 {o2 c b 9} 11.937 20.044 17.121 @vectorlist {C} color= yellow {c1* c b 9} P 9.425 20.923 17.126 {n1 c b 9} 10.609 21.828 16.991 {c2 c b 9} 11.85 21.264 16.979 {o2 c b 9} 11.937 20.044 17.121 {c2 c b 9} P 11.85 21.264 16.979 {n3 c b 9} 12.927 22.026 16.78 {c4 c b 9} 12.803 23.34 16.604 {n4 c b 9} 13.919 24.099 16.421 {c4 c b 9} P 12.803 23.34 16.604 {c5 c b 9} 11.555 23.961 16.609 {c6 c b 9} 10.43 23.166 16.8 {n1 c b 9} 10.609 21.828 16.991 @vectorlist {scH C} color= gray master= {H} {n4 c b 9} P 13.919 24.099 16.421 {1hn4 c b 9} 13.836 25.087 16.288 {n4 c b 9} P 13.919 24.099 16.421 {2hn4 c b 9} 14.821 23.668 16.415 {c6 c b 9} P 10.43 23.166 16.8 {hc6 c b 9} 9.52 23.581 16.807 {c5 c b 9} P 11.555 23.961 16.609 {hc5 c b 9} 11.447 24.946 16.474 @vectorlist {bp Hb gc} color= purple master= {base-pr Hb} {o2 c b 9} P U 12.293 19.769 17.339 {h} U 12.891 19.309 17.706 {n3 c b 9} P U 13.298 21.707 16.884 {h} U 13.948 21.147 17.067 {h} P U 15.144 23.289 16.372 {o6 g a 4} U 15.682 22.658 16.3 @subgroup {A-T} dominant @balllist {scn t} color= blue radius= .2 {n1 t b 8} 11.118 23.502 13.064 {n3 t b 8} 13.09 22.282 13.338 @balllist {sco t} color= red radius= .2 {o2 t b 8} 11.065 21.322 13.607 {o4 t b 8} 15.086 23.232 13.064 @vectorlist {T} color= sky {c1* t b 8} P 9.633 23.486 12.953 {n1 t b 8} 11.118 23.502 13.064 {c2 t b 8} 11.725 22.327 13.358 {o2 t b 8} 11.065 21.322 13.607 {c2 t b 8} P 11.725 22.327 13.358 {n3 t b 8} 13.09 22.282 13.338 {c4 t b 8} 13.857 23.378 13.084 {o4 t b 8} 15.086 23.232 13.064 {c4 t b 8} P 13.857 23.378 13.084 {c5 t b 8} 13.22 24.604 12.885 {c5m t b 8} 14.044 25.84 12.702 {n1 t b 8} P 11.118 23.502 13.064 {c6 t b 8} 11.823 24.649 12.845 {c5 t b 8} 13.22 24.604 12.885 @vectorlist {scH t} color= gray master= {H} {c5m t b 8} P 14.044 25.84 12.702 {1hc5m t b 8} 13.434 26.622 12.573 {c5m t b 8} P 14.044 25.84 12.702 {2hc5m t b 8} 14.628 25.726 11.898 {c5m t b 8} P 14.044 25.84 12.702 {3hc5m t b 8} 14.608 25.979 13.516 {c6 t b 8} P 11.823 24.649 12.845 {hc6 t b 8} 11.359 25.516 12.664 {n3 t b 8} P 13.09 22.282 13.338 {hn3 t b 8} 13.554 21.415 13.519 @balllist {scn a} color= blue radius= .2 {n9 a a 5} 15.652 16.299 14.596 {n7 a a 5} 17.176 17.698 13.694 {n6 a a 5} 16.492 20.664 13.274 {n1 a a 5} 14.359 20.009 13.981 {n3 a a 5} 13.775 17.802 14.724 @vectorlist {A} color= pink {c1* a a 5} P 15.044 15.138 15.261 {n9 a a 5} 15.652 16.299 14.596 {c8 a a 5} 16.925 16.452 14.133 {n7 a a 5} 17.176 17.698 13.694 {c5 a a 5} 16.014 18.338 13.901 {c6 a a 5} 15.621 19.696 13.698 {n6 a a 5} 16.492 20.664 13.274 {c6 a a 5} P 15.621 19.696 13.698 {n1 a a 5} 14.359 20.009 13.981 {c2 a a 5} 13.524 19.08 14.457 {n3 a a 5} 13.775 17.802 14.724 {c4 a a 5} 15.057 17.508 14.42 {c5 a a 5} 16.014 18.338 13.901 {n9 a a 5} P 15.652 16.299 14.596 {c4 a a 5} 15.057 17.508 14.42 {n3 a a 5} 13.775 17.802 14.724 @vectorlist {scH a} color= gray master= {H} {c8 a a 5} P 16.925 16.452 14.133 {hc8 a a 5} 17.594 15.709 14.12 {c2 a a 5} P 13.524 19.08 14.457 {hc2 a a 5} 12.587 19.359 14.666 {n6 a a 5} P 16.492 20.664 13.274 {1hn6 a a 5} 16.172 21.603 13.145 {n6 a a 5} P 16.492 20.664 13.274 {2hn6 a a 5} 17.44 20.426 13.062 @vectorlist {bp Hb at} color= purple master= {base-pr Hb} {h} P U 15.895 22.018 13.125 {o4 t b 8} U 15.363 22.816 13.085 {h} P U 13.793 20.998 13.656 {n1 a a 5} U 14.12 20.426 13.844 @group {2 bp, side} dominant animate moview= 2 @subgroup {d a} instance= {DNA a str} @subgroup {d b} instance= {DNA b str} @subgroup {gc} instance= {G-C} @subgroup {at} instance= {A-T} @group {G-C only} dominant animate moview= 3 @subgroup {d a} instance= {DNA a str} @subgroup {d b} instance= {DNA b str} @subgroup {gc} instance= {G-C} @labellist {H lbl gc} color= white master= {rec labels} { Hydr.} 11.447 24.946 16.474 @labellist {Do lbl gc} color= bluetint master= {rec labels} { Donor} 13.836 25.087 16.288 @labellist {Ac lbl gc} color= pinktint master= {rec labels} { Accept.} 16.005 22.279 16.257 { Accept.} 18.681 20.702 16.066 @group {A-T only} dominant animate moview= 4 @subgroup {d a} instance= {DNA a str} @subgroup {d b} instance= {DNA b str} @subgroup {at} instance= {A-T} @labellist {Ac lbl at} color= pinktint master= {rec labels} { Accept.} P 17.176 17.698 13.694 { Accept.} P 15.086 23.232 13.064 @labellist {Do lbl at} color= bluetint master= {rec labels} { Donor} P 17.44 20.426 13.062 @labellist {Me lbl at} color= yellowtint master= {rec labels} { Methyl} P 14.044 25.84 12.702 @kinemage 2 @caption (B&T Fig. 7.1, 7.2a) B DNA - 12-residue duplex, with sugar-phosphate backbone, color-coded bases, and base-pair Hbonds. Views 3 and 4 look along the major and minor grooves. (from PDB file 2BNA) @onewidth @viewid {side} @zoom 1.24 @zslab 160 @center 14.273 20.469 7.688 @matrix .955085 .163244 -.247311 -.281017 .234139 -.930704 -.094026 .9584 .269497 @2viewid {end} @2zoom 1.37 @2zslab 210 @2center 14.273 20.469 7.688 @2matrix -.995085 .047542 -.086864 .058253 .990413 -.125255 .080076 -.1297 -.988315 @3viewid {major groove} @3zoom 1.24 @3zslab 160 @3center 14.273 20.469 7.688 @3matrix .956915 .038792 -.287766 -.27123 -.234432 -.933529 -.103675 .971359 -.21381 @4viewid {minor groove} @4zoom 1.24 @4zslab 180 @4center 14.273 20.469 7.688 @4matrix .908328 .335653 -.249554 -.41641 .669671 -.614935 -.039286 .662479 .74805 @group {B DNA bb} @subgroup dominant {sugar-phos} @vectorlist {mc a} color= white master= {strand a} {o5* c a 1}P 17.967 33.641 25.114 {c5* c a 1}18.032 32.997 23.823 {c4* c a 1}18.981 31.83 23.93 {o4* c a 1}18.383 30.772 24.709 {c3* c a 1}P 19.356 31.16 22.611 {c2* c a 1}18.234 30.174 22.444 {c1* c a 1}18.333 29.611 23.846 {o4* c a 1}18.383 30.772 24.709 {c4* c a 1}P 18.981 31.83 23.93 {c3* c a 1}19.356 31.16 22.611 {o3* c a 1}20.588 30.488 22.702 {p g a 2}21.586 30.564 21.476 {o1p g a 2}20.812 30.967 20.274 {o2p g a 2}P 22.735 31.405 21.876 {p g a 2}21.586 30.564 21.476 {o5* g a 2}22.068 29.046 21.366 {c5* g a 2}22.339 28.344 22.587 {c4* g a 2}22.457 26.901 22.258 {o4* g a 2}21.231 26.245 22.57 {c3* g a 2}P 22.756 26.584 20.811 {c2* g a 2}21.373 26.3 20.251 {c1* g a 2}20.758 25.561 21.413 {o4* g a 2}21.231 26.245 22.57 {c4* g a 2}P 22.457 26.901 22.258 {c3* g a 2}22.756 26.584 20.811 {o3* g a 2}23.632 25.475 20.714 {p c a 3}24.155 24.981 19.297 {o1p c a 3}23.669 25.875 18.229 {o2p c a 3}P 25.623 24.813 19.359 {p c a 3}24.155 24.981 19.297 {o5* c a 3}23.454 23.553 19.172 {c5* c a 3}23.9 22.466 20.009 {c4* c a 3}22.779 21.457 20.039 {o4* c a 3}21.567 22.184 20.197 {c3* c a 3}P 22.569 20.659 18.763 {c2* c a 3}21.07 20.384 18.773 {c1* c a 3}20.51 21.302 19.846 {o4* c a 3}21.567 22.184 20.197 {c4* c a 3}P 22.779 21.457 20.039 {c3* c a 3}22.569 20.659 18.763 {o3* c a 3}23.36 19.464 18.717 {p g a 4}23.59 18.696 17.329 {o1p g a 4}23.427 19.617 16.175 {o2p g a 4}P 24.895 17.978 17.377 {p g a 4}23.59 18.696 17.329 {o5* g a 4}22.405 17.628 17.363 {c5* g a 4}22.066 16.97 18.609 {c4* g a 4}20.744 16.272 18.416 {o4* g a 4}19.672 17.243 18.381 {c3* g a 4}P 20.623 15.447 17.145 {c2* g a 4}19.954 16.437 16.183 {c1* g a 4}19. 17.157 17.12 {o4* g a 4}19.672 17.243 18.381 {c4* g a 4}P 20.744 16.272 18.416 {c3* g a 4}20.623 15.447 17.145 {o3* g a 4}19.884 14.234 17.37 {p a a 5}19.756 13.088 16.256 {o1p a a 5}20.176 13.56 14.91 {o2p a a 5}P 20.452 11.905 16.759 {p a a 5}19.756 13.088 16.256 {o5* a a 5}18.176 12.817 16.216 {c5* a a 5}17.341 13.294 17.289 {c4* a a 5}15.942 13.614 16.797 {o4* a a 5}15.788 15.005 16.486 {c3* a a 5}P 15.339 12.809 15.654 {c2* a a 5}15.283 13.84 14.513 {c1* a a 5}15.044 15.138 15.261 {o4* a a 5}15.788 15.005 16.486 {c4* a a 5}P 15.942 13.614 16.797 {c3* a a 5}15.339 12.809 15.654 {o3* a a 5}14.06 12.283 16.021 {p a a 6}13.181 11.416 15.009 {o1p a a 6}14.055 10.712 14.039 {o2p a a 6}P 12.241 10.554 15.751 {p a a 6}13.181 11.416 15.009 {o5* a a 6}12.262 12.537 14.356 {c5* a a 6}11.424 13.295 15.238 {c4* a a 6}10.527 14.166 14.418 {o4* a a 6}11.253 15.32 13.975 {c3* a a 6}P 9.884 13.5 13.215 {c2* a a 6}10.591 14.172 12.035 {c1* a a 6}10.987 15.529 12.588 {o4* a a 6}11.253 15.32 13.975 {c4* a a 6}P 10.527 14.166 14.418 {c3* a a 6}9.884 13.5 13.215 {o3* a a 6}8.465 13.658 13.242 {p t a 7}7.569 13.436 11.946 {o1p t a 7}8.106 12.288 11.163 {o2p t a 7}P 6.144 13.377 12.376 {p t a 7}7.569 13.436 11.946 {o5* t a 7}7.747 14.826 11.189 {c5* t a 7}7.197 15.997 11.812 {c4* t a 7}7.427 17.139 10.876 {o4* t a 7}8.818 17.234 10.592 {c3* t a 7}P 6.717 17.003 9.553 {c2* t a 7}7.787 17.366 8.522 {c1* t a 7}8.932 17.926 9.354 {o4* t a 7}8.818 17.234 10.592 {c4* t a 7}P 7.427 17.139 10.876 {c3* t a 7}6.717 17.003 9.553 {o3* t a 7}5.566 17.85 9.517 {p t a 8}4.562 17.847 8.275 {o1p t a 8}4.528 16.517 7.603 {o2p t a 8}P 3.277 18.423 8.718 {p t a 8}4.562 17.847 8.275 {o5* t a 8}5.268 18.927 7.344 {c5* t a 8}5.675 20.177 7.93 {c4* t a 8}6.381 20.91 6.851 {o4* t a 8}7.689 20.368 6.697 {c3* t a 8}P 5.703 20.937 5.483 {c2* t a 8}6.722 20.23 4.571 {c1* t a 8}8.036 20.436 5.311 {o4* t a 8}7.689 20.368 6.697 {c4* t a 8}P 6.381 20.91 6.851 {c3* t a 8}5.703 20.937 5.483 {o3* t a 8}5.381 22.299 5.108 {p c a 9}4.902 22.735 3.648 {o1p c a 9}4.239 21.614 2.932 {o2p c a 9}P 4.084 23.963 3.795 {p c a 9}4.902 22.735 3.648 {o5* c a 9}6.294 23.116 2.956 {c5* c a 9}7.017 24.267 3.43 {c4* c a 9}8.27 24.355 2.631 {o4* c a 9}8.985 23.112 2.765 {c4* c a 9}P 8.27 24.355 2.631 {c3* c a 9}8.084 24.598 1.135 {o3* c a 9}9.016 25.579 0.65 {c3* c a 9}P 8.084 24.598 1.135 {c2* c a 9}8.342 23.205 0.556 {o4* c a 9}P 8.985 23.112 2.765 {c1* c a 9}9.486 22.794 1.461 {c2* c a 9}P 8.342 23.205 0.556 {c1* c a 9}9.486 22.794 1.461 {c1* c a 9}P 9.486 22.794 1.461 {c2* c a 9}8.342 23.205 0.556 {o3* c a 9}P 9.016 25.579 0.65 {p g a 10}8.564 26.823 -0.247 {o1p g a 10}7.136 26.755 -0.641 {p g a 10}P 8.564 26.823 -0.247 {o2p g a 10}8.928 28.055 0.488 {p g a 10}P 8.564 26.823 -0.247 {o5* g a 10}9.491 26.623 -1.546 {c5* g a 10}10.88 26.225 -1.41 {c4* g a 10}11.236 25.287 -2.542 {o4* g a 10}10.883 23.94 -2.181 {c4* g a 10}P 11.236 25.287 -2.542 {c3* g a 10}10.59 25.524 -3.91 {o3* g a 10}11.571 25.54 -4.967 {c3* g a 10}P 10.59 25.524 -3.91 {c2* g a 10}9.571 24.384 -4.041 {o4* g a 10}P 10.883 23.94 -2.181 {c1* g a 10}10.431 23.33 -3.391 {c2* g a 10}P 9.571 24.384 -4.041 {c1* g a 10}10.431 23.33 -3.391 {c1* g a 10}P 10.431 23.33 -3.391 {c2* g a 10}9.571 24.384 -4.041 {o3* g a 10}P 11.571 25.54 -4.967 {p c a 11}12.043 26.957 -5.557 {o1p c a 11}11.298 27.207 -6.824 {p c a 11}P 12.043 26.957 -5.557 {o2p c a 11}11.881 27.995 -4.497 {p c a 11}P 12.043 26.957 -5.557 {o5* c a 11}13.595 26.728 -5.884 {c5* c a 11}14.553 26.525 -4.824 {c4* c a 11}15.436 25.339 -5.168 {o4* c a 11}14.683 24.116 -4.965 {c4* c a 11}P 15.436 25.339 -5.168 {c3* c a 11}15.97 25.269 -6.593 {o3* c a 11}17.348 24.873 -6.653 {c3* c a 11}P 15.97 25.269 -6.593 {c2* c a 11}15.028 24.241 -7.235 {o4* c a 11}P 14.683 24.116 -4.965 {c1* c a 11}14.873 23.255 -6.099 {c2* c a 11}P 15.028 24.241 -7.235 {c1* c a 11}14.873 23.255 -6.099 {c1* c a 11}P 14.873 23.255 -6.099 {c2* c a 11}15.028 24.241 -7.235 {o3* c a 11}P 17.348 24.873 -6.653 {p g a 12}18.272 25.359 -7.869 {o1p g a 12}17.616 26.502 -8.555 {p g a 12}P 18.272 25.359 -7.869 {o2p g a 12}19.673 25.581 -7.438 {p g a 12}P 18.272 25.359 -7.869 {o5* g a 12}18.28 24.093 -8.836 {c5* g a 12}19.318 23.115 -8.697 {c4* g a 12}18.835 21.939 -9.474 {o4* g a 12}17.477 21.703 -9.097 {c4* g a 12}P 18.835 21.939 -9.474 {c3* g a 12}18.807 22.137 -10.971 {o3* g a 12}19.853 21.408 -11.637 {c3* g a 12}P 18.807 22.137 -10.971 {c2* g a 12}17.39 21.71 -11.384 {o4* g a 12}P 17.477 21.703 -9.097 {c1* g a 12}16.903 20.964 -10.156 {c2* g a 12}P 17.39 21.71 -11.384 {c1* g a 12}16.903 20.964 -10.156 {c1* g a 12}P 16.903 20.964 -10.156 {c2* g a 12}17.39 21.71 -11.384 @vectorlist {mc b} color= yellowtint master= {strand b} {o5* c b 1}P 6.53 11.893 -8.949 {o5* c b 1}6.53 11.893 -8.949 {c5* c b 1}7.172 10.715 -9.471 {c4* c b 1}8.641 10.805 -9.141 {o4* c b 1}9.174 12.019 -9.707 {c4* c b 1}P 8.641 10.805 -9.141 {c3* c b 1}9.001 10.814 -7.661 {o3* c b 1}10.225 10.118 -7.38 {c3* c b 1}P 9.001 10.814 -7.661 {c2* c b 1}9.104 12.307 -7.376 {o4* c b 1}P 9.174 12.019 -9.707 {c1* c b 1}9.789 12.786 -8.651 {c2* c b 1}P 9.104 12.307 -7.376 {c1* c b 1}9.789 12.786 -8.651 {c1* c b 1}P 9.789 12.786 -8.651 {c2* c b 1}9.104 12.307 -7.376 {o3* c b 1}P 10.225 10.118 -7.38 {p g b 2}10.397 9.296 -6.018 {o1p g b 2}9.774 10.051 -4.914 {p g b 2}P 10.397 9.296 -6.018 {o2p g b 2}9.877 7.916 -6.25 {p g b 2}P 10.397 9.296 -6.018 {o5* g b 2}11.993 9.249 -5.819 {c5* g b 2}12.867 9.452 -6.957 {c4* g b 2}13.966 10.396 -6.552 {o4* g b 2}13.606 11.749 -6.844 {c4* g b 2}P 13.966 10.396 -6.552 {c3* g b 2}14.315 10.328 -5.087 {o3* g b 2}15.671 9.985 -4.864 {c3* g b 2}P 14.315 10.328 -5.087 {c2* g b 2}13.969 11.708 -4.553 {o4* g b 2}P 13.606 11.749 -6.844 {c1* g b 2}14.062 12.592 -5.781 {c2* g b 2}P 13.969 11.708 -4.553 {c1* g b 2}14.062 12.592 -5.781 {c1* g b 2}P 14.062 12.592 -5.781 {c2* g b 2}13.969 11.708 -4.553 {o3* g b 2}P 15.671 9.985 -4.864 {p c b 3}16.127 9.685 -3.372 {o1p c b 3}14.892 9.465 -2.585 {p c b 3}P 16.127 9.685 -3.372 {o2p c b 3}17.128 8.57 -3.382 {p c b 3}P 16.127 9.685 -3.372 {o5* c b 3}16.811 11.058 -2.932 {c5* c b 3}17.854 11.627 -3.736 {c4* c b 3}17.745 13.101 -3.494 {o4* c b 3}16.367 13.447 -3.519 {c4* c b 3}P 17.745 13.101 -3.494 {c3* c b 3}18.135 13.516 -2.1 {o3* c b 3}19.54 13.621 -1.933 {c3* c b 3}P 18.135 13.516 -2.1 {c2* c b 3}17.375 14.827 -1.901 {o4* c b 3}P 16.367 13.447 -3.519 {c1* c b 3}16.289 14.766 -2.972 {c2* c b 3}P 17.375 14.827 -1.901 {c1* c b 3}16.289 14.766 -2.972 {c1* c b 3}P 16.289 14.766 -2.972 {c2* c b 3}17.375 14.827 -1.901 {o3* c b 3}P 19.54 13.621 -1.933 {p g b 4}20.152 13.723 -0.469 {o1p g b 4}19.263 13.024 0.493 {p g b 4}P 20.152 13.723 -0.469 {o2p g b 4}21.563 13.284 -0.485 {p g b 4}P 20.152 13.723 -0.469 {o5* g b 4}20.158 15.301 -0.281 {c5* g b 4}21.131 16.073 -0.995 {c4* g b 4}20.738 17.486 -0.771 {o4* g b 4}19.312 17.507 -0.808 {c4* g b 4}P 20.738 17.486 -0.771 {c3* g b 4}21.171 18.086 0.557 {o3* g b 4}21.695 19.407 0.389 {c3* g b 4}P 21.171 18.086 0.557 {c2* g b 4}19.898 18.021 1.393 {o4* g b 4}P 19.312 17.507 -0.808 {c1* g b 4}18.828 18.206 0.333 {c2* g b 4}P 19.898 18.021 1.393 {c1* g b 4}18.828 18.206 0.333 {c1* g b 4}P 18.828 18.206 0.333 {c2* g b 4}19.898 18.021 1.393 {o3* g b 4}P 21.695 19.407 0.389 {p a b 5}22.144 20.317 1.624 {o1p a b 5}22.189 19.493 2.847 {p a b 5}P 22.144 20.317 1.624 {o2p a b 5}23.41 21.028 1.289 {p a b 5}P 22.144 20.317 1.624 {o5* a b 5}20.936 21.375 1.679 {c5* a b 5}20.226 21.741 0.471 {c4* a b 5}19.257 22.885 0.706 {o4* a b 5}17.953 22.36 0.954 {c4* a b 5}P 19.257 22.885 0.706 {c3* a b 5}19.548 23.891 1.808 {o3* a b 5}19.147 25.236 1.479 {c3* a b 5}P 19.548 23.891 1.808 {c2* a b 5}18.772 23.306 2.978 {o4* a b 5}P 17.953 22.36 0.954 {c1* a b 5}17.586 22.642 2.302 {c2* a b 5}P 18.772 23.306 2.978 {c1* a b 5}17.586 22.642 2.302 {c1* a b 5}P 17.586 22.642 2.302 {c2* a b 5}18.772 23.306 2.978 {o3* a b 5}P 19.147 25.236 1.479 {p a b 6}19.209 26.382 2.595 {o1p a b 6}20.198 25.95 3.596 {p a b 6}P 19.209 26.382 2.595 {o2p a b 6}19.422 27.726 2.001 {p a b 6}P 19.209 26.382 2.595 {o5* a b 6}17.753 26.335 3.238 {c5* a b 6}16.602 26.133 2.407 {c4* a b 6}15.379 26.238 3.289 {o4* a b 6}14.983 24.929 3.736 {c4* a b 6}P 15.379 26.238 3.289 {c3* a b 6}15.432 27.169 4.502 {o3* a b 6}14.264 28. 4.562 {c3* a b 6}P 15.432 27.169 4.502 {c2* a b 6}15.554 26.191 5.659 {o4* a b 6}P 14.983 24.929 3.736 {c1* a b 6}14.764 24.99 5.146 {c2* a b 6}P 15.554 26.191 5.659 {c1* a b 6}14.764 24.99 5.146 {c1* a b 6}P 14.764 24.99 5.146 {c2* a b 6}15.554 26.191 5.659 {o3* a b 6}P 14.264 28. 4.562 {p t b 7}13.87 28.886 5.838 {o1p t b 7}15.047 29.241 6.66 {p t b 7}P 13.87 28.886 5.838 {o2p t b 7}13.054 30.03 5.354 {p t b 7}P 13.87 28.886 5.838 {o5* t b 7}12.921 27.902 6.662 {c5* t b 7}11.734 27.355 6.055 {c4* t b 7}11.072 26.504 7.097 {o4* t b 7}11.903 25.358 7.379 {c4* t b 7}P 11.072 26.504 7.097 {c3* t b 7}10.847 27.204 8.427 {o3* t b 7}9.459 27.285 8.772 {c3* t b 7}P 10.847 27.204 8.427 {c2* t b 7}11.671 26.388 9.425 {o4* t b 7}P 11.903 25.358 7.379 {c1* t b 7}11.717 25.027 8.762 {c2* t b 7}P 11.671 26.388 9.425 {c1* t b 7}11.717 25.027 8.762 {c1* t b 7}P 11.717 25.027 8.762 {c2* t b 7}11.671 26.388 9.425 {o3* t b 7}P 9.459 27.285 8.772 {p t b 8}8.977 28.094 10.069 {o1p t b 8}10.039 28.973 10.599 {p t b 8}P 8.977 28.094 10.069 {o2p t b 8}7.726 28.795 9.678 {p t b 8}P 8.977 28.094 10.069 {o5* t b 8}8.704 26.87 11.073 {c5* t b 8}8.263 25.613 10.501 {c4* t b 8}8.114 24.489 11.504 {o4* t b 8}9.334 23.734 11.571 {c4* t b 8}P 8.114 24.489 11.504 {c3* t b 8}7.688 24.807 12.931 {o3* t b 8}6.601 23.97 13.377 {c3* t b 8}P 7.688 24.807 12.931 {c2* t b 8}8.974 24.614 13.725 {o4* t b 8}P 9.334 23.734 11.571 {c1* t b 8}9.633 23.486 12.953 {c2* t b 8}P 8.974 24.614 13.725 {c1* t b 8}9.633 23.486 12.953 {c1* t b 8}P 9.633 23.486 12.953 {c2* t b 8}8.974 24.614 13.725 {o3* t b 8}P 6.601 23.97 13.377 {p c b 9}6.073 24.053 14.883 {o1p c b 9}6.478 25.34 15.501 {p c b 9}P 6.073 24.053 14.883 {o2p c b 9}4.63 23.755 14.95 {p c b 9}P 6.073 24.053 14.883 {o5* c b 9}6.86 22.843 15.555 {c5* c b 9}6.638 21.508 15.081 {c4* c b 9}7.369 20.629 16.056 {o4* c b 9}8.748 20.947 15.863 {c4* c b 9}P 7.369 20.629 16.056 {c3* c b 9}7.052 20.936 17.524 {o3* c b 9}6.376 19.852 18.231 {c3* c b 9}P 7.052 20.936 17.524 {c2* c b 9}8.382 21.382 18.142 {o4* c b 9}P 8.748 20.947 15.863 {c1* c b 9}9.425 20.923 17.126 {c2* c b 9}P 8.382 21.382 18.142 {c1* c b 9}9.425 20.923 17.126 {c1* c b 9}P 9.425 20.923 17.126 {c2* c b 9}8.382 21.382 18.142 {o3* c b 9}P 6.376 19.852 18.231 {p g b 10}5.826 20.045 19.739 {o1p g b 10}5.458 21.483 19.98 {p g b 10}P 5.826 20.045 19.739 {o2p g b 10}4.815 19.009 20.06 {p g b 10}P 5.826 20.045 19.739 {o5* g b 10}7.109 19.699 20.615 {c5* g b 10}7.907 18.525 20.341 {c4* g b 10}9.045 18.563 21.326 {o4* g b 10}10.08 19.401 20.799 {c4* g b 10}P 9.045 18.563 21.326 {c3* g b 10}8.719 19.172 22.7 {o3* g b 10}9.432 18.527 23.752 {c3* g b 10}P 8.719 19.172 22.7 {c2* g b 10}9.121 20.625 22.555 {o4* g b 10}P 10.08 19.401 20.799 {c1* g b 10}10.393 20.371 21.805 {c2* g b 10}P 9.121 20.625 22.555 {c1* g b 10}10.393 20.371 21.805 {c1* g b 10}P 10.393 20.371 21.805 {c2* g b 10}9.121 20.625 22.555 {o3* g b 10}P 9.432 18.527 23.752 {p c b 11}8.586 17.974 24.978 {o1p c b 11}7.898 19.15 25.583 {p c b 11}P 8.586 17.974 24.978 {o2p c b 11}7.73 16.842 24.498 {p c b 11}P 8.586 17.974 24.978 {o5* c b 11}9.697 17.38 25.964 {c5* c b 11}10.594 16.363 25.49 {c4* c b 11}11.98 16.935 25.548 {o4* c b 11}12.077 18.144 24.777 {c4* c b 11}P 11.98 16.935 25.548 {c3* c b 11}12.464 17.27 26.945 {o3* c b 11}13.312 16.248 27.466 {c3* c b 11}P 12.464 17.27 26.945 {c2* c b 11}13.155 18.63 26.785 {o4* c b 11}P 12.077 18.144 24.777 {c1* c b 11}13.246 18.821 25.273 {c2* c b 11}P 13.155 18.63 26.785 {c1* c b 11}13.246 18.821 25.273 {c1* c b 11}P 13.246 18.821 25.273 {c2* c b 11}13.155 18.63 26.785 {o3* c b 11}P 13.312 16.248 27.466 {p g b 12}13.698 16.22 29.019 {o1p g b 12}12.625 16.846 29.843 {p g b 12}P 13.698 16.22 29.019 {o2p g b 12}14.108 14.835 29.359 {p g b 12}P 13.698 16.22 29.019 {o5* g b 12}14.988 17.155 29.09 {c5* g b 12}16.259 16.609 28.755 {c4* g b 12}17.16 17.788 28.643 {o4* g b 12}16.611 18.68 27.665 {c4* g b 12}P 17.16 17.788 28.643 {c3* g b 12}17.225 18.649 29.869 {o3* g b 12}17.944 18.032 30.949 {c3* g b 12}P 17.225 18.649 29.869 {c2* g b 12}17.954 19.835 29.253 {o4* g b 12}P 16.611 18.68 27.665 {c1* g b 12}17.258 19.932 27.891 {c2* g b 12}P 17.954 19.835 29.253 {c1* g b 12}17.258 19.932 27.891 {c1* g b 12}P 17.258 19.932 27.891 {c2* g b 12}17.954 19.835 29.253 @group {bases} @subgroup dominant {A} @vectorlist {A a} color= pink master= {strand a} {c1* a a 5}P 15.044 15.138 15.261 {n9 a a 5}15.652 16.299 14.596 {c8 a a 5}16.925 16.452 14.133 {n7 a a 5}17.176 17.698 13.694 {c5 a a 5}16.014 18.338 13.901 {c6 a a 5}15.621 19.696 13.698 {n6 a a 5}16.492 20.664 13.274 {c6 a a 5}P 15.621 19.696 13.698 {n1 a a 5}14.359 20.009 13.981 {c2 a a 5}13.524 19.08 14.457 {n3 a a 5}13.775 17.802 14.724 {c4 a a 5}15.057 17.508 14.42 {c5 a a 5}16.014 18.338 13.901 {n9 a a 5}P 15.652 16.299 14.596 {c4 a a 5}15.057 17.508 14.42 {c1* a a 6}P 10.987 15.529 12.588 {n9 a a 6}12.268 16.019 12.017 {c8 a a 6}13.431 15.335 11.779 {n7 a a 6}14.404 16.124 11.289 {c5 a a 6}13.828 17.342 11.217 {c6 a a 6}14.315 18.616 10.78 {n6 a a 6}15.586 18.801 10.312 {c6 a a 6}P 14.315 18.616 10.78 {n1 a a 6}13.476 19.646 10.834 {c2 a a 6}12.231 19.46 11.276 {n3 a a 6}11.655 18.339 11.702 {c4 a a 6}12.53 17.314 11.645 {c5 a a 6}13.828 17.342 11.217 {n9 a a 6}P 12.268 16.019 12.017 {c4 a a 6}12.53 17.314 11.645 @vectorlist {A b} color= pink master= {strand b} {c1* a b 5}P 17.586 22.642 2.302 {n9 a b 5}17.258 21.345 2.933 {c8 a b 5}18.072 20.303 3.319 {n7 a b 5}17.373 19.257 3.812 {c5 a b 5}16.087 19.669 3.739 {c6 a b 5}14.852 19.045 4.087 {n6 a b 5}14.778 17.79 4.616 {c6 a b 5}P 14.852 19.045 4.087 {n1 a b 5}13.73 19.74 3.883 {c2 a b 5}13.795 20.953 3.344 {n3 a b 5}14.873 21.634 2.96 {c4 a b 5}15.986 20.921 3.205 {c5 a b 5}16.087 19.669 3.739 {n9 a b 5}P 17.258 21.345 2.933 {c4 a b 5}15.986 20.921 3.205 {c1* a b 6}P 14.764 24.99 5.146 {n9 a b 6}15.306 23.737 5.681 {c8 a b 6}16.606 23.337 5.804 {n7 a b 6}16.71 22.098 6.31 {c5 a b 6}15.435 21.719 6.498 {c6 a b 6}14.854 20.504 6.966 {n6 a b 6}15.61 19.425 7.323 {c6 a b 6}P 14.854 20.504 6.966 {n1 a b 6}13.524 20.427 7. {c2 a b 6}12.785 21.469 6.616 {n3 a b 6}13.193 22.657 6.162 {c4 a b 6}14.554 22.697 6.137 {c5 a b 6}15.435 21.719 6.498 {n9 a b 6}P 15.306 23.737 5.681 {c4 a b 6}14.554 22.697 6.137 @subgroup {T} dominant @vectorlist {T a} color= sky master= {strand a} {c1* t a 7}P 8.932 17.926 9.354 {n1 t a 7}10.267 17.554 8.844 {c2 t a 7}11.085 18.541 8.403 {o2 t a 7}10.722 19.715 8.401 {c2 t a 7}P 11.085 18.541 8.403 {n3 t a 7}12.342 18.193 7.987 {c4 t a 7}12.781 16.906 7.968 {o4 t a 7}13.93 16.679 7.574 {c4 t a 7}P 12.781 16.906 7.968 {c5 t a 7}11.926 15.907 8.398 {c5m t a 7}12.402 14.5 8.364 {n1 t a 7}P 10.267 17.554 8.844 {c6 t a 7}10.652 16.254 8.858 {c5 t a 7}11.926 15.907 8.398 {c1* t a 8}P 8.036 20.436 5.311 {n1 t a 8}9.058 19.388 5.055 {c2 t a 8}10.317 19.783 4.738 {o2 t a 8}10.582 20.978 4.598 {c2 t a 8}P 10.317 19.783 4.738 {n3 t a 8}11.273 18.831 4.552 {c4 t a 8}11.011 17.498 4.659 {o4 t a 8}11.934 16.706 4.447 {c4 t a 8}P 11.011 17.498 4.659 {c5 t a 8}9.713 17.101 4.975 {c5m t a 8}9.36 15.637 5.039 {n1 t a 8}P 9.058 19.388 5.055 {c6 t a 8}8.732 18.073 5.187 {c5 t a 8}9.713 17.101 4.975 @vectorlist {T b} color= sky master= {strand b} {c1* t b 7}P 11.717 25.027 8.762 {n1 t b 7}12.897 24.231 9.202 {c2 t b 7}12.762 22.901 9.523 {o2 t b 7}11.672 22.323 9.483 {c2 t b 7}P 12.762 22.901 9.523 {n3 t b 7}13.885 22.194 9.808 {c4 t b 7}15.121 22.757 9.806 {o4 t b 7}16.071 22.006 10.003 {c4 t b 7}P 15.121 22.757 9.806 {c5 t b 7}15.246 24.117 9.517 {c5m t b 7}16.595 24.772 9.461 {n1 t b 7}P 12.897 24.231 9.202 {c6 t b 7}14.108 24.851 9.2 {c5 t b 7}15.246 24.117 9.517 {c1* t b 8}P 9.633 23.486 12.953 {n1 t b 8}11.118 23.502 13.064 {c2 t b 8}11.725 22.327 13.358 {o2 t b 8}11.065 21.322 13.607 {c2 t b 8}P 11.725 22.327 13.358 {n3 t b 8}13.09 22.282 13.338 {c4 t b 8}13.857 23.378 13.084 {o4 t b 8}15.086 23.232 13.064 {c4 t b 8}P 13.857 23.378 13.084 {c5 t b 8}13.22 24.604 12.885 {c5m t b 8}14.044 25.84 12.702 {n1 t b 8}P 11.118 23.502 13.064 {c6 t b 8}11.823 24.649 12.845 {c5 t b 8}13.22 24.604 12.885 @subgroup dominant {G} @vectorlist {G a} color= sea master= {strand a} {c1* g a 2}P 20.758 25.561 21.413 {n9 g a 2}19.307 25.765 21.438 {c8 g a 2}18.575 26.845 21.017 {n7 g a 2}17.262 26.697 21.24 {c5 g a 2}17.175 25.482 21.823 {c6 g a 2}16.029 24.784 22.29 {o6 g a 2}14.858 25.157 22.267 {c6 g a 2}P 16.029 24.784 22.29 {n1 g a 2}16.357 23.558 22.831 {c2 g a 2}17.613 23.027 22.946 {n2 g a 2}17.749 21.803 23.53 {c2 g a 2}P 17.613 23.027 22.946 {n3 g a 2}18.687 23.687 22.51 {c4 g a 2}18.394 24.893 21.964 {c5 g a 2}17.175 25.482 21.823 {n9 g a 2}P 19.307 25.765 21.438 {c4 g a 2}18.394 24.893 21.964 {c1* g a 4}P 19. 17.157 17.12 {n9 g a 4}18.653 18.537 16.727 {c8 g a 4}19.399 19.565 16.205 {n7 g a 4}18.681 20.702 16.066 {c5 g a 4}17.445 20.357 16.508 {c6 g a 4}16.234 21.119 16.598 {o6 g a 4}16.005 22.279 16.257 {c6 g a 4}P 16.234 21.119 16.598 {n1 g a 4}15.196 20.359 17.071 {c2 g a 4}15.236 19.043 17.418 {n2 g a 4}14.078 18.481 17.858 {c2 g a 4}P 15.236 19.043 17.418 {n3 g a 4}16.351 18.329 17.322 {c4 g a 4}17.398 19.047 16.88 {c5 g a 4}17.445 20.357 16.508 {n9 g a 4}P 18.653 18.537 16.727 {c4 g a 4}17.398 19.047 16.88 {c1* g a 10}P 10.431 23.33 -3.391 {n9 g a 10}9.848 22.022 -3.051 {c8 g a 10}8.588 21.594 -2.701 {n7 g a 10}8.571 20.291 -2.353 {c5 g a 10}9.864 19.92 -2.487 {c6 g a 10}10.505 18.685 -2.189 {o6 g a 10}10.017 17.677 -1.686 {c6 g a 10}P 10.505 18.685 -2.189 {n1 g a 10}11.859 18.733 -2.467 {c2 g a 10}12.561 19.802 -2.957 {n2 g a 10}13.891 19.655 -3.186 {c2 g a 10}P 12.561 19.802 -2.957 {n3 g a 10}11.975 20.971 -3.185 {c4 g a 10}10.642 20.94 -2.929 {c5 g a 10}9.864 19.92 -2.487 {n9 g a 10}P 9.848 22.022 -3.051 {c4 g a 10}10.642 20.94 -2.929 {c1* g a 12}P 16.903 20.964 -10.156 {n9 g a 12}15.422 20.975 -9.98 {c8 g a 12}14.534 22.023 -10.024 {n7 g a 12}13.253 21.633 -9.851 {c5 g a 12}13.346 20.292 -9.7 {c6 g a 12}12.306 19.327 -9.529 {o6 g a 12}11.094 19.503 -9.476 {c6 g a 12}P 12.306 19.327 -9.529 {n1 g a 12}12.807 18.056 -9.426 {c2 g a 12}14.119 17.687 -9.454 {n2 g a 12}14.393 16.35 -9.392 {c2 g a 12}P 14.119 17.687 -9.454 {n3 g a 12}15.096 18.592 -9.614 {c4 g a 12}14.643 19.862 -9.74 {c5 g a 12}13.346 20.292 -9.7 {n9 g a 12}P 15.422 20.975 -9.98 {c4 g a 12}14.643 19.862 -9.74 @vectorlist {G b} color= sea master= {strand b} {c1* g b 2}P 14.062 12.592 -5.781 {n9 g b 2}13.048 13.654 -5.631 {c8 g b 2}11.714 13.486 -5.349 {n7 g b 2}11.058 14.652 -5.267 {c5 g b 2}12.012 15.58 -5.495 {c6 g b 2}11.896 16.995 -5.51 {o6 g b 2}10.882 17.675 -5.342 {c6 g b 2}P 11.896 16.995 -5.51 {n1 g b 2}13.118 17.599 -5.693 {c2 g b 2}14.318 16.985 -5.877 {n2 g b 2}15.418 17.78 -6.013 {c2 g b 2}P 14.318 16.985 -5.877 {n3 g b 2}14.426 15.655 -5.902 {c4 g b 2}13.237 15.021 -5.705 {c5 g b 2}12.012 15.58 -5.495 {n9 g b 2}P 13.048 13.654 -5.631 {c4 g b 2}13.237 15.021 -5.705 {c1* g b 4}P 18.828 18.206 0.333 {n9 g b 4}17.579 17.536 0.699 {c8 g b 4}17.382 16.273 1.202 {n7 g b 4}16.083 15.995 1.404 {c5 g b 4}15.458 17.134 1.016 {c6 g b 4}14.078 17.459 1.034 {o6 g b 4}13.154 16.776 1.427 {c6 g b 4}P 14.078 17.459 1.034 {n1 g b 4}13.833 18.729 0.565 {c2 g b 4}14.758 19.626 0.115 {n2 g b 4}14.319 20.858 -0.26 {c2 g b 4}P 14.758 19.626 0.115 {n3 g b 4}16.057 19.33 0.101 {c4 g b 4}16.328 18.077 0.564 {c5 g b 4}15.458 17.134 1.016 {n9 g b 4}P 17.579 17.536 0.699 {c4 g b 4}16.328 18.077 0.564 {c1* g b 10}P 10.393 20.371 21.805 {n9 g b 10}10.913 21.563 21.156 {c8 g b 10}10.334 22.749 20.787 {n7 g b 10}11.222 23.598 20.237 {c5 g b 10}12.384 22.905 20.284 {c6 g b 10}13.698 23.277 19.894 {o6 g b 10}14.081 24.341 19.4 {c6 g b 10}P 13.698 23.277 19.894 {n1 g b 10}14.599 22.264 20.144 {c2 g b 10}14.329 21.032 20.673 {n2 g b 10}15.358 20.149 20.816 {c2 g b 10}P 14.329 21.032 20.673 {n3 g b 10}13.098 20.678 21.036 {c4 g b 10}12.211 21.662 20.817 {c5 g b 10}12.384 22.905 20.284 {n9 g b 10}P 10.913 21.563 21.156 {c4 g b 10}12.211 21.662 20.817 {c1* g b 12}P 17.258 19.932 27.891 {n9 g b 12}16.186 20.93 27.914 {c8 g b 12}14.92 20.853 28.419 {n7 g b 12}14.223 21.979 28.203 {c5 g b 12}15.093 22.777 27.553 {c6 g b 12}14.915 24.094 27.06 {o6 g b 12}13.904 24.802 27.108 {c6 g b 12}P 14.915 24.094 27.06 {n1 g b 12}16.081 24.573 26.503 {c2 g b 12}17.272 23.901 26.385 {n2 g b 12}18.34 24.536 25.824 {c2 g b 12}P 17.272 23.901 26.385 {n3 g b 12}17.408 22.657 26.809 {c4 g b 12}16.291 22.176 27.381 {c5 g b 12}15.093 22.777 27.553 {n9 g b 12}P 16.186 20.93 27.914 {c4 g b 12}16.291 22.176 27.381 @subgroup {C} dominant @vectorlist {C a} color= yellow master= {strand a} {c1* c a 1}P 18.333 29.611 23.846 {n1 c a 1}17.117 28.868 24.167 {c2 c a 1}17.271 27.706 24.834 {o2 c a 1}18.423 27.361 25.122 {c2 c a 1}P 17.271 27.706 24.834 {n3 c a 1}16.196 26.968 25.127 {c4 c a 1}14.974 27.387 24.768 {n4 c a 1}13.88 26.634 25.07 {c4 c a 1}P 14.974 27.387 24.768 {c5 c a 1}14.779 28.583 24.085 {c6 c a 1}15.901 29.335 23.779 {n1 c a 1}17.117 28.868 24.167 {c1* c a 3}P 20.51 21.302 19.846 {n1 c a 3}19.444 22.185 19.351 {c2 c a 3}18.147 21.882 19.616 {o2 c a 3}17.9 20.819 20.191 {c2 c a 3}P 18.147 21.882 19.616 {n3 c a 3}17.18 22.745 19.271 {c4 c a 3}17.493 23.894 18.654 {n4 c a 3}16.516 24.772 18.306 {c4 c a 3}P 17.493 23.894 18.654 {c5 c a 3}18.806 24.219 18.34 {c6 c a 3}19.803 23.328 18.715 {n1 c a 3}19.444 22.185 19.351 {c1* c a 9}P 9.486 22.794 1.461 {n1 c a 9}9.742 21.349 1.404 {c2 c a 9}10.956 20.92 0.963 {o2 c a 9}11.778 21.766 0.592 {c2 c a 9}P 10.956 20.92 0.963 {n3 c a 9}11.224 19.605 0.926 {c4 c a 9}10.294 18.724 1.312 {n4 c a 9}10.553 17.393 1.235 {c4 c a 9}P 10.294 18.724 1.312 {c5 c a 9}9.034 19.125 1.743 {c6 c a 9}8.768 20.484 1.787 {n1 c a 9}9.742 21.349 1.404 {c1* c a 11}P 14.873 23.255 -6.099 {n1 c a 11}13.664 22.417 -6.262 {c2 c a 11}13.787 21.062 -6.166 {o2 c a 11}14.904 20.59 -5.939 {c2 c a 11}P 13.787 21.062 -6.166 {n3 c a 11}12.713 20.274 -6.324 {c4 c a 11}11.518 20.8 -6.572 {n4 c a 11}10.45 19.977 -6.766 {c4 c a 11}P 11.518 20.8 -6.572 {c5 c a 11}11.342 22.177 -6.665 {c6 c a 11}12.461 23.004 -6.503 {n1 c a 11}13.664 22.417 -6.262 @vectorlist {C b} color= yellow master= {strand b} {c1* c b 1}P 9.789 12.786 -8.651 {n1 c b 1}9.504 14.211 -8.932 {c2 c b 1}10.516 15.121 -8.887 {o2 c b 1}11.641 14.725 -8.579 {c2 c b 1}P 10.516 15.121 -8.887 {n3 c b 1}10.286 16.399 -9.202 {c4 c b 1}9.057 16.79 -9.556 {n4 c b 1}8.818 18.095 -9.897 {c4 c b 1}P 9.057 16.79 -9.556 {c5 c b 1}7.991 15.895 -9.591 {c6 c b 1}8.24 14.567 -9.268 {n1 c b 1}9.504 14.211 -8.932 {c1* c b 3}P 16.289 14.766 -2.972 {n1 c b 3}14.91 14.902 -2.446 {c2 c b 3}14.291 16.116 -2.458 {o2 c b 3}14.923 17.094 -2.845 {c2 c b 3}P 14.291 16.116 -2.458 {n3 c b 3}13.031 16.22 -2.039 {c4 c b 3}12.372 15.14 -1.594 {n4 c b 3}11.083 15.252 -1.161 {c4 c b 3}P 12.372 15.14 -1.594 {c5 c b 3}12.971 13.886 -1.548 {c6 c b 3}14.28 13.784 -1.994 {n1 c b 3}14.91 14.902 -2.446 {c1* c b 9}P 9.425 20.923 17.126 {n1 c b 9}10.609 21.828 16.991 {c2 c b 9}11.85 21.264 16.979 {o2 c b 9}11.937 20.044 17.121 {c2 c b 9}P 11.85 21.264 16.979 {n3 c b 9}12.927 22.026 16.78 {c4 c b 9}12.803 23.34 16.604 {n4 c b 9}13.919 24.099 16.421 {c4 c b 9}P 12.803 23.34 16.604 {c5 c b 9}11.555 23.961 16.609 {c6 c b 9}10.43 23.166 16.8 {n1 c b 9}10.609 21.828 16.991 {c1* c b 11}P 13.246 18.821 25.273 {n1 c b 11}13.151 20.258 24.886 {c2 c b 11}14.279 20.932 24.523 {o2 c b 11}15.355 20.339 24.556 {c2 c b 11}P 14.279 20.932 24.523 {n3 c b 11}14.198 22.215 24.148 {c4 c b 11}13.013 22.84 24.145 {n4 c b 11}12.923 24.127 23.722 {c4 c b 11}P 13.013 22.84 24.145 {c5 c b 11}11.843 22.2 24.551 {c6 c b 11}11.932 20.866 24.928 {n1 c b 11}13.151 20.258 24.886 @subgroup dominant {base-pr Hb} @vectorlist {bp Hb} color= gray {n2 g a 12}P U 13.809 16.005 -9.219 {o2 c b 1}U 12.225 15.07 -8.752 {n1 g a 12}P U 12.224 17.673 -9.374 {n3 c b 1}U 10.869 16.782 -9.254 {o6 g a 12}P U 10.506 19.139 -9.585 {n4 c b 1}U 9.406 18.459 -9.788 {o6 g b 2}P U 10.772 18.263 -5.706 {n4 c a 11}U 10.56 19.389 -6.402 {n3 c a 11}P U 12.815 19.6 -6.165 {n1 g b 2}U 13.016 18.273 -5.852 {o2 c a 11}P U 15.03 19.902 -5.957 {n2 g b 2}U 15.292 18.468 -5.995 {o2 c b 3}P U 14.663 17.738 -2.931 {n2 g a 10}U 14.151 19.011 -3.1 {n1 g a 10}P U 12.151 18.106 -2.36 {n3 c b 3}U 12.739 16.847 -2.146 {n4 c a 9}P U 11.232 17.232 1.285 {o6 g b 4}U 12.475 16.937 1.377 {n1 g b 4}P U 13.175 18.95 0.656 {n3 c a 9}U 11.882 19.384 0.835 {o2 c a 9}P U 12.407 21.541 0.381 {n2 g b 4}U 13.69 21.083 -0.049 {n6 a b 5}P U 14.125 17.541 4.577 {o4 t a 8}U 12.587 16.955 4.486 {n3 t a 8}P U 11.909 19.066 4.379 {n1 a b 5}U 13.094 19.505 4.056 {n6 a b 6}P U 15.246 18.83 7.377 {o4 t a 7}U 14.294 17.274 7.52 {n1 a b 6}P U 13.219 19.851 7.255 {n3 t a 7}U 12.647 18.769 7.732 {o4 t b 7}P U 15.967 21.317 10.069 {n6 a a 6}U 15.69 19.49 10.246 {n3 t b 7}P U 13.782 21.552 10.067 {n1 a a 6}U 13.579 20.288 10.575 {n6 a a 5}P U 16.157 21.276 13.224 {o4 t b 8}U 15.421 22.62 13.114 {n1 a a 5}P U 14.028 20.602 13.813 {n3 t b 8}U 13.421 21.689 13.506 {n4 c b 9}P U 14.446 23.64 16.38 {o6 g a 4}U 15.478 22.738 16.298 {n1 g a 4}P U 14.635 20.771 16.999 {n3 c b 9}U 13.488 21.614 16.852 {o2 c b 9}P U 12.482 19.646 17.309 {n2 g a 4}U 13.533 18.879 17.67 {o6 g b 10}P U 14.711 24.453 19.117 {n4 c a 3}U 15.886 24.66 18.589 {n3 c a 3}P U 16.527 22.623 19.492 {n1 g b 10}U 15.252 22.386 19.923 {n2 g b 10}P U 16.017 20.323 20.654 {o2 c a 3}U 17.241 20.645 20.353 {o6 g a 2}P U 14.343 24.883 22.654 {n4 c b 11}U 13.438 24.401 23.335 {n1 g a 2}P U 15.829 23.23 23.153 {n3 c b 11}U 14.726 22.543 23.826 {o2 c b 11}P U 15.916 20.682 24.316 {n2 g a 2}U 17.188 21.46 23.77 {o2 c a 1}P U 18.403 26.682 25.291 {n2 g b 12}U 18.36 25.215 25.655 {n1 g b 12}P U 16.11 25.179 26.155 {n3 c a 1}U 16.167 26.362 25.475 {o6 g b 12}P U 13.898 25.27 26.587 {n4 c a 1}U 13.886 26.166 25.591 {n4 c b 3}P U 10.807 15.881 -1.297 {o6 g a 10}U 10.293 17.048 -1.55 @group {labels} dominant @labellist {Drawn} color= gray {Major groove} 15.94 17.595 8.435 {Minor} 4.615 23.918 8.838 @kinemage 3 @caption (B&T Fig. 7.2b) A form DNA duplex, with base-pair Hbonds and color-coded bases. Sugar-phosphate backbone shown in white (strand a) or yellowtint (strand b); bases color-coded as G seagreen, C yellow, A pink, and U skyblue; base-pair Hbonds in gray. (from PDB file 3ANA) @onewidth @viewid {side} @zoom 1.0 @zslab 160 @center -10.118 18.165 .376 @matrix .54922 .79014 -.2721 .65967 -.21003 .72161 .51302 -.57582 -.63658 @2viewid {end} @2zoom 1.0 @2zslab 160 @2center -10.118 18.165 .376 @2matrix .68611 .03344 .72673 .61462 -.5611 -.55444 .38923 .82707 -.40553 @3viewid {major groove} @3zoom 1.00 @3zslab 160 @3center -10.118 18.165 0.376 @3matrix 0.55490 0.55291 -0.62159 0.47902 0.39853 0.78212 0.68016 -0.73176 -0.04371 @4viewid {minor groove} @4zoom 1.00 @4zslab 160 @4center -10.118 18.165 0.376 @4matrix 0.62489 0.65785 0.42041 0.36559 -0.72238 0.58695 0.68982 -0.21308 -0.69191 @group {A DNA} @subgroup dominant {sugar-phos} @vectorlist {mc} color= white master= {strand a} {o5* g a 1}P 4.03 21.418 3.524 {c5* g a 1}2.885 21.689 2.669 {c4* g a 1}3.463 22.61 1.611 {o4* g a 1}4.201 21.868 0.698 {c4* g a 1}P 3.463 22.61 1.611 {c3* g a 1}2.391 23.283 0.792 {o3* g a 1}2.065 24.52 1.441 {c3* g a 1}P 2.391 23.283 0.792 {c2* g a 1}2.981 23.364 -0.605 {o4* g a 1}P 4.201 21.868 0.698 {c1* g a 1}3.742 22.062 -0.654 {c2* g a 1}P 2.981 23.364 -0.605 {c1* g a 1}3.742 22.062 -0.654 {c1* g a 1}P 3.742 22.062 -0.654 {c2* g a 1}2.981 23.364 -0.605 {o3* g a 1}P 2.065 24.52 1.441 {p g a 2}0.48 24.8 1.264 {o1p g a 2}0.089 23.482 1.811 {p g a 2}P 0.48 24.8 1.264 {o2p g a 2}-0.129 26. 1.815 {p g a 2}P 0.48 24.8 1.264 {o5* g a 2}0.522 25.068 -0.311 {c5* g a 2}0.534 26.467 -0.685 {c4* g a 2}0.262 26.434 -2.176 {o4* g a 2}0.899 25.347 -2.798 {c4* g a 2}P 0.262 26.434 -2.176 {c3* g a 2}-1.22 26.252 -2.483 {o3* g a 2}-1.943 27.513 -2.496 {c3* g a 2}P -1.22 26.252 -2.483 {c2* g a 2}-1.211 25.554 -3.835 {o4* g a 2}P 0.899 25.347 -2.798 {c1* g a 2}0.049 24.711 -3.751 {c2* g a 2}P -1.211 25.554 -3.835 {c1* g a 2}0.049 24.711 -3.751 {c1* g a 2}P 0.049 24.711 -3.751 {c2* g a 2}-1.211 25.554 -3.835 {o3* g a 2}P -1.943 27.513 -2.496 {p g a 3}-3.421 27.347 -1.913 {o1p g a 3}-3.269 26.337 -0.765 {p g a 3}P -3.421 27.347 -1.913 {o2p g a 3}-3.87 28.677 -1.49 {p g a 3}P -3.421 27.347 -1.913 {o5* g a 3}-4.191 26.645 -3.128 {c5* g a 3}-4.32 27.371 -4.364 {c4* g a 3}-4.877 26.357 -5.334 {o4* g a 3}-4.063 25.206 -5.388 {c4* g a 3}P -4.877 26.357 -5.334 {c3* g a 3}-6.219 25.737 -4.961 {o3* g a 3}-7.284 26.649 -5.018 {c3* g a 3}P -6.219 25.737 -4.961 {c2* g a 3}-6.259 24.67 -6.064 {o4* g a 3}P -4.063 25.206 -5.388 {c1* g a 3}-4.873 24.127 -5.886 {c2* g a 3}P -6.259 24.67 -6.064 {c1* g a 3}-4.873 24.127 -5.886 {c1* g a 3}P -4.873 24.127 -5.886 {c2* g a 3}-6.259 24.67 -6.064 {o3* g a 3}P -7.284 26.649 -5.018 {p a a 4}-8.874 26.378 -4.752 {o1p a a 4}-8.849 26.301 -3.261 {p a a 4}P -8.874 26.378 -4.752 {o2p a a 4}-9.354 27.696 -5.374 {p a a 4}P -8.874 26.378 -4.752 {o5* a a 4}-9.333 25.283 -5.708 {c5* a a 4}-9.694 25.364 -7.105 {c4* a a 4}-10.586 24.175 -7.345 {o4* a a 4}-9.888 22.967 -7.185 {c4* a a 4}P -10.586 24.175 -7.345 {c3* a a 4}-11.7 24.021 -6.309 {o3* a a 4}-12.656 25.043 -6.464 {c3* a a 4}P -11.7 24.021 -6.309 {c2* a a 4}-12.138 22.582 -6.625 {o4* a a 4}P -9.888 22.967 -7.185 {c1* a a 4}-10.778 21.937 -6.687 {c2* a a 4}P -12.138 22.582 -6.625 {c1* a a 4}-10.778 21.937 -6.687 {c1* a a 4}P -10.778 21.937 -6.687 {c2* a a 4}-12.138 22.582 -6.625 {o3* a a 4}P -12.656 25.043 -6.464 {p t a 5}-14.101 25.177 -5.77 {o1p t a 5}-13.656 25.98 -4.614 {p t a 5}P -14.101 25.177 -5.77 {o2p t a 5}-14.756 25.753 -7.007 {p t a 5}P -14.101 25.177 -5.77 {o5* t a 5}-14.716 23.77 -5.414 {c5* t a 5}-15.625 23.316 -6.469 {c4* t a 5}-16.203 21.989 -5.984 {o4* t a 5}-15.114 21.174 -5.664 {c4* t a 5}P -16.203 21.989 -5.984 {c3* t a 5}-17.018 22.103 -4.716 {o3* t a 5}-18.437 22.314 -4.889 {c3* t a 5}P -17.018 22.103 -4.716 {c2* t a 5}-16.735 20.769 -4.017 {o4* t a 5}P -15.114 21.174 -5.664 {c1* t a 5}-15.379 20.367 -4.525 {c2* t a 5}P -16.735 20.769 -4.017 {c1* t a 5}-15.379 20.367 -4.525 {c1* t a 5}P -15.379 20.367 -4.525 {c2* t a 5}-16.735 20.769 -4.017 {o3* t a 5}P -18.437 22.314 -4.889 {p c a 6}-19.327 22.695 -3.648 {o1p c a 6}-18.599 23.819 -3.052 {p c a 6}P -19.327 22.695 -3.648 {o2p c a 6}-20.753 22.878 -4.12 {p c a 6}P -19.327 22.695 -3.648 {o5* c a 6}-19.507 21.572 -2.469 {c5* c a 6}-20.387 20.525 -2.91 {c4* c a 6}-20.118 19.264 -2.131 {o4* c a 6}-18.784 18.81 -2.184 {c4* c a 6}P -20.118 19.264 -2.131 {c3* c a 6}-20.376 19.459 -0.641 {o3* c a 6}-21.776 19.589 -0.445 {c3* c a 6}P -20.376 19.459 -0.641 {c2* c a 6}-19.718 18.206 -0.098 {o4* c a 6}P -18.784 18.81 -2.184 {c1* c a 6}-18.465 18.153 -0.943 {c2* c a 6}P -19.718 18.206 -0.098 {c1* c a 6}-18.465 18.153 -0.943 {c1* c a 6}P -18.465 18.153 -0.943 {c2* c a 6}-19.718 18.206 -0.098 {o3* c a 6}P -21.776 19.589 -0.445 {p c a 7}-22.286 19.84 1.037 {o1p c a 7}-21.863 21.215 1.344 {p c a 7}P -22.286 19.84 1.037 {o2p c a 7}-23.738 19.491 0.952 {p c a 7}P -22.286 19.84 1.037 {o5* c a 7}-21.448 18.923 1.953 {c5* c a 7}-22.413 18.145 2.692 {c4* c a 7}-21.57 17.261 3.573 {o4* c a 7}-20.226 17.269 3.203 {c4* c a 7}P -21.57 17.261 3.573 {c3* c a 7}-21.61 17.8 4.983 {o3* c a 7}-22.806 17.35 5.628 {c3* c a 7}P -21.61 17.8 4.983 {c2* c a 7}-20.366 17.212 5.583 {o4* c a 7}P -20.226 17.269 3.203 {c1* c a 7}-19.46 17.151 4.396 {c2* c a 7}P -20.366 17.212 5.583 {c1* c a 7}-19.46 17.151 4.396 {c1* c a 7}P -19.46 17.151 4.396 {c2* c a 7}-20.366 17.212 5.583 {o3* c a 7}P -22.806 17.35 5.628 {p c a 8}-23.242 18.404 6.794 {o1p c a 8}-23.331 19.678 6.117 {p c a 8}P -23.242 18.404 6.794 {o2p c a 8}-24.436 17.723 7.314 {p c a 8}P -23.242 18.404 6.794 {o5* c a 8}-22.041 18.197 7.808 {c5* c a 8}-22.429 17.167 8.76 {c4* c a 8}-21.294 17.082 9.748 {o4* c a 8}-20.104 17.374 9.08 {c4* c a 8}P -21.294 17.082 9.748 {c3* c a 8}-21.343 18.108 10.856 {o3* c a 8}-22.186 17.622 11.897 {c3* c a 8}P -21.343 18.108 10.856 {c2* c a 8}-19.886 18.254 11.274 {o4* c a 8}P -20.104 17.374 9.08 {c1* c a 8}-19.179 17.832 10.028 {c2* c a 8}P -19.886 18.254 11.274 {c1* c a 8}-19.179 17.832 10.028 {c1* c a 8}P -19.179 17.832 10.028 {c2* c a 8}-19.886 18.254 11.274 @vectorlist {mc} color= yellowtint master= {strand b} {o5* g b 9}P -8.38 25.303 13.485 {c5* g b 9}-8.312 24.869 14.855 {c4* g b 9}-8.905 23.478 15.02 {o4* g b 9}-10.312 23.628 15.153 {c4* g b 9}P -8.905 23.478 15.02 {c3* g b 9}-8.722 22.472 13.899 {o3* g b 9}-7.458 21.783 13.85 {c3* g b 9}P -8.722 22.472 13.899 {c2* g b 9}-9.893 21.523 14.223 {o4* g b 9}P -10.312 23.628 15.153 {c1* g b 9}-10.984 22.529 14.513 {c2* g b 9}P -9.893 21.523 14.223 {c1* g b 9}-10.984 22.529 14.513 {c1* g b 9}P -10.984 22.529 14.513 {c2* g b 9}-9.893 21.523 14.223 {o3* g b 9}P -7.458 21.783 13.85 {p g b 10}-7.158 20.533 12.889 {o1p g b 10}-7.121 21.109 11.478 {p g b 10}P -7.158 20.533 12.889 {o2p g b 10}-5.847 19.868 13.196 {p g b 10}P -7.158 20.533 12.889 {o5* g b 10}-8.291 19.455 12.996 {c5* g b 10}-8.261 18.542 11.861 {c4* g b 10}-9.511 17.715 12.035 {o4* g b 10}-10.591 18.579 12.288 {c4* g b 10}P -9.511 17.715 12.035 {c3* g b 10}-9.883 16.883 10.82 {o3* g b 10}-9.179 15.638 10.842 {c3* g b 10}P -9.883 16.883 10.82 {c2* g b 10}-11.403 16.742 10.945 {o4* g b 10}P -10.591 18.579 12.288 {c1* g b 10}-11.691 18.116 11.505 {c2* g b 10}P -11.403 16.742 10.945 {c1* g b 10}-11.691 18.116 11.505 {c1* g b 10}P -11.691 18.116 11.505 {c2* g b 10}-11.403 16.742 10.945 {o3* g b 10}P -9.179 15.638 10.842 {p g b 11}-8.387 15.29 9.405 {o1p g b 11}-7.931 16.527 8.934 {p g b 11}P -8.387 15.29 9.405 {o2p g b 11}-7.549 14.113 9.89 {p g b 11}P -8.387 15.29 9.405 {o5* g b 11}-9.645 14.612 8.684 {c5* g b 11}-10.171 13.481 9.467 {c4* g b 11}-11.398 13.205 8.622 {o4* g b 11}-12.173 14.377 8.573 {c4* g b 11}P -11.398 13.205 8.622 {c3* g b 11}-11.08 12.962 7.163 {o3* g b 11}-10.539 11.692 6.905 {c3* g b 11}P -11.08 12.962 7.163 {c2* g b 11}-12.478 13.104 6.593 {o4* g b 11}P -12.173 14.377 8.573 {c1* g b 11}-12.937 14.312 7.359 {c2* g b 11}P -12.478 13.104 6.593 {c1* g b 11}-12.937 14.312 7.359 {c1* g b 11}P -12.937 14.312 7.359 {c2* g b 11}-12.478 13.104 6.593 {o3* g b 11}P -10.539 11.692 6.905 {p a b 12}-9.841 11.287 5.508 {o1p a b 12}-8.809 12.321 5.303 {p a b 12}P -9.841 11.287 5.508 {o2p a b 12}-9.303 9.908 5.775 {p a b 12}P -9.841 11.287 5.508 {o5* a b 12}-11.096 11.303 4.547 {c5* a b 12}-11.921 10.192 4.2 {c4* a b 12}-12.693 10.565 2.959 {o4* a b 12}-13.333 11.81 3.15 {c4* a b 12}P -12.693 10.565 2.959 {c3* a b 12}-11.878 10.784 1.7 {o3* a b 12}-11.609 9.571 1.023 {c3* a b 12}P -11.878 10.784 1.7 {c2* a b 12}-12.773 11.676 0.845 {o4* a b 12}P -13.333 11.81 3.15 {c1* a b 12}-13.403 12.524 1.922 {c2* a b 12}P -12.773 11.676 0.845 {c1* a b 12}-13.403 12.524 1.922 {c1* a b 12}P -13.403 12.524 1.922 {c2* a b 12}-12.773 11.676 0.845 {o3* a b 12}P -11.609 9.571 1.023 {p t b 13}-10.321 9.101 0.36 {o1p t b 13}-9.153 9.956 0.85 {p t b 13}P -10.321 9.101 0.36 {o2p t b 13}-10.061 7.653 0.405 {p t b 13}P -10.321 9.101 0.36 {o5* t b 13}-10.567 9.543 -1.166 {c5* t b 13}-11.616 8.983 -2.006 {c4* t b 13}-11.97 10.131 -2.932 {o4* t b 13}-12.314 11.238 -2.136 {c4* t b 13}P -11.97 10.131 -2.932 {c3* t b 13}-10.829 10.719 -3.751 {o3* t b 13}-10.41 9.871 -4.796 {c3* t b 13}P -10.829 10.719 -3.751 {c2* t b 13}-11.506 11.996 -4.231 {o4* t b 13}P -12.314 11.238 -2.136 {c1* t b 13}-12.211 12.406 -2.959 {c2* t b 13}P -11.506 11.996 -4.231 {c1* t b 13}-12.211 12.406 -2.959 {c1* t b 13}P -12.211 12.406 -2.959 {c2* t b 13}-11.506 11.996 -4.231 {o3* t b 13}P -10.41 9.871 -4.796 {p c b 14}-9.057 9.985 -5.53 {o1p c b 14}-7.945 10.159 -4.569 {p c b 14}P -9.057 9.985 -5.53 {o2p c b 14}-8.706 8.784 -6.295 {p c b 14}P -9.057 9.985 -5.53 {o5* c b 14}-9.24 11.339 -6.335 {c5* c b 14}-9.951 11.315 -7.586 {c4* c b 14}-9.858 12.726 -8.115 {o4* c b 14}-10.356 13.623 -7.154 {c4* c b 14}P -9.858 12.726 -8.115 {c3* c b 14}-8.436 13.25 -8.369 {o3* c b 14}-7.837 12.658 -9.499 {c3* c b 14}P -8.436 13.25 -8.369 {c2* c b 14}-8.729 14.738 -8.524 {o4* c b 14}P -10.356 13.623 -7.154 {c1* c b 14}-9.703 14.876 -7.376 {c2* c b 14}P -8.729 14.738 -8.524 {c1* c b 14}-9.703 14.876 -7.376 {c1* c b 14}P -9.703 14.876 -7.376 {c2* c b 14}-8.729 14.738 -8.524 {o3* c b 14}P -7.837 12.658 -9.499 {p c b 15}-6.465 12.852 -10.197 {o1p c b 15}-5.484 12.402 -9.138 {p c b 15}P -6.465 12.852 -10.197 {o2p c b 15}-6.481 12.069 -11.425 {p c b 15}P -6.465 12.852 -10.197 {o5* c b 15}-6.474 14.418 -10.357 {c5* c b 15}-6.549 15.002 -11.67 {c4* c b 15}-6.027 16.409 -11.505 {o4* c b 15}-6.432 17.029 -10.317 {c4* c b 15}P -6.027 16.409 -11.505 {c3* c b 15}-4.496 16.466 -11.398 {o3* c b 15}-4.018 16.052 -12.666 {c3* c b 15}P -4.496 16.466 -11.398 {c2* c b 15}-4.306 17.897 -10.931 {o4* c b 15}P -6.432 17.029 -10.317 {c1* c b 15}-5.453 18.011 -9.948 {c2* c b 15}P -4.306 17.897 -10.931 {c1* c b 15}-5.453 18.011 -9.948 {c1* c b 15}P -5.453 18.011 -9.948 {c2* c b 15}-4.306 17.897 -10.931 {o3* c b 15}P -4.018 16.052 -12.666 {p c b 16}-2.482 15.614 -12.853 {o1p c b 16}-2.318 14.341 -12.261 {p c b 16}P -2.482 15.614 -12.853 {o2p c b 16}-2.585 15.371 -14.401 {p c b 16}P -2.482 15.614 -12.853 {o5* c b 16}-1.84 16.944 -12.475 {c5* c b 16}-0.403 16.969 -12.608 {c4* c b 16}0.047 18.388 -12.315 {o4* c b 16}-0.78 18.944 -11.336 {c4* c b 16}P 0.047 18.388 -12.315 {c3* c b 16}1.463 18.441 -11.794 {o3* c b 16}2.299 19.142 -12.737 {c3* c b 16}P 1.463 18.441 -11.794 {c2* c b 16}1.396 19.151 -10.455 {o4* c b 16}P -0.78 18.944 -11.336 {c1* c b 16}-0.082 19.292 -10.157 {c2* c b 16}P 1.396 19.151 -10.455 {c1* c b 16}-0.082 19.292 -10.157 {c1* c b 16}P -0.082 19.292 -10.157 {c2* c b 16}1.396 19.151 -10.455 @subgroup {AT base-pr} dominant @vectorlist {A} color= pink master= {strand a} {c1* a a 4}P -10.778 21.937 -6.687 {n9 a a 4}-10.246 21.511 -5.392 {c8 a a 4}-9.361 22.144 -4.565 {n7 a a 4}-9.031 21.491 -3.466 {c5 a a 4}-9.757 20.314 -3.608 {c6 a a 4}-9.869 19.195 -2.776 {n6 a a 4}-9.242 19. -1.628 {c6 a a 4}P -9.869 19.195 -2.776 {n1 a a 4}-10.668 18.226 -3.266 {c2 a a 4}-11.34 18.311 -4.436 {n3 a a 4}-11.295 19.345 -5.259 {c4 a a 4}-10.483 20.306 -4.778 {c5 a a 4}-9.757 20.314 -3.608 {n9 a a 4}P -10.246 21.511 -5.392 {c4 a a 4}-10.483 20.306 -4.778 {n3 a a 4}-11.295 19.345 -5.259 @vectorlist {T} color= sky master= {strand a} {c1* t a 5}P -15.379 20.367 -4.525 {n1 t a 5}-14.398 20.542 -3.444 {c2 t a 5}-14.133 19.378 -2.745 {o2 t a 5}-14.737 18.331 -3.048 {c2 t a 5}P -14.133 19.378 -2.745 {n3 t a 5}-13.234 19.443 -1.735 {c4 t a 5}-12.579 20.57 -1.393 {o4 t a 5}-11.738 20.558 -0.44 {c4 t a 5}P -12.579 20.57 -1.393 {c5 t a 5}-12.834 21.742 -2.136 {c5m t a 5}-12.115 23.011 -1.775 {n1 t a 5}P -14.398 20.542 -3.444 {c6 t a 5}-13.726 21.673 -3.132 {c5 t a 5}-12.834 21.742 -2.136 @vectorlist {A} color= pink master= {strand b} {c1* a b 12}P -13.403 12.524 1.922 {n9 a b 12}-12.623 13.761 2.029 {c8 a b 12}-11.607 14.118 2.843 {n7 a b 12}-11.178 15.346 2.629 {c5 a b 12}-11.972 15.813 1.593 {c6 a b 12}-12.021 17.034 0.903 {n6 a b 12}-11.256 18.092 1.121 {c6 a b 12}P -12.021 17.034 0.903 {n1 a b 12}-12.953 17.082 -0.089 {c2 a b 12}-13.766 16.056 -0.387 {n3 a b 12}-13.768 14.892 0.222 {c4 a b 12}-12.85 14.843 1.206 {c5 a b 12}-11.972 15.813 1.593 {n9 a b 12}P -12.623 13.761 2.029 {c4 a b 12}-12.85 14.843 1.206 {n3 a b 12}-13.768 14.892 0.222 @vectorlist {T} color= sky master= {strand b} {c1* t b 13}P -12.211 12.406 -2.959 {n1 t b 13}-11.384 13.416 -2.305 {c2 t b 13}-11.466 14.693 -2.803 {o2 t b 13}-12.218 14.916 -3.737 {c2 t b 13}P -11.466 14.693 -2.803 {n3 t b 13}-10.675 15.618 -2.198 {c4 t b 13}-9.837 15.342 -1.175 {o4 t b 13}-9.104 16.247 -0.685 {c4 t b 13}P -9.837 15.342 -1.175 {c5 t b 13}-9.78 14.02 -0.672 {c5m t b 13}-8.844 13.68 0.449 {n1 t b 13}P -11.384 13.416 -2.305 {c6 t b 13}-10.558 13.096 -1.264 {c5 t b 13}-9.78 14.02 -0.672 @vectorlist {AT Hb} color= gray master= {base-pr Hb} {n3 t b 13}P U -10.673 16.266 -2.463 {n1 a a 4}U -10.67 17.578 -3.001 {o4 t b 13}P U -9.137 16.908 -0.912 {n6 a a 4}U -9.209 18.339 -1.401 {n1 a b 12}P U -13.021 17.654 -0.487 {n3 t a 5}U -13.166 18.871 -1.337 {o4 t a 5}P U -11.624 19.974 -0.071 {n6 a b 12}U -11.37 18.676 0.752 @subgroup {GC base-pr} dominant @vectorlist {G} color= sea master= {strand a} {c1* g a 1}P 3.742 22.062 -0.654 {n9 g a 1}2.941 20.886 -1.001 {c8 g a 1}2.594 19.856 -0.169 {n7 g a 1}1.887 18.915 -0.747 {c5 g a 1}1.822 19.321 -2.069 {c6 g a 1}1.211 18.725 -3.19 {o6 g a 1}0.562 17.666 -3.203 {c6 g a 1}P 1.211 18.725 -3.19 {n1 g a 1}1.37 19.447 -4.347 {c2 g a 1}2.037 20.627 -4.382 {n2 g a 1}2.1 21.263 -5.548 {c2 g a 1}P 2.037 20.627 -4.382 {n3 g a 1}2.637 21.227 -3.363 {c4 g a 1}2.47 20.517 -2.233 {c5 g a 1}1.822 19.321 -2.069 {n9 g a 1}P 2.941 20.886 -1.001 {c4 g a 1}2.47 20.517 -2.233 {n3 g a 1}2.637 21.227 -3.363 {c1* g a 2}P 0.049 24.711 -3.751 {n9 g a 2}-0.398 23.368 -3.368 {c8 g a 2}-0.297 22.748 -2.153 {n7 g a 2}-0.841 21.555 -2.14 {c5 g a 2}-1.346 21.393 -3.421 {c6 g a 2}-2.056 20.327 -4.013 {o6 g a 2}-2.374 19.248 -3.501 {c6 g a 2}P -2.056 20.327 -4.013 {n1 g a 2}-2.402 20.538 -5.321 {c2 g a 2}-2.082 21.669 -5.975 {n2 g a 2}-2.484 21.71 -7.247 {c2 g a 2}P -2.082 21.669 -5.975 {n3 g a 2}-1.428 22.703 -5.459 {c4 g a 2}-1.093 22.496 -4.182 {c5 g a 2}-1.346 21.393 -3.421 {n9 g a 2}P -0.398 23.368 -3.368 {c4 g a 2}-1.093 22.496 -4.182 {n3 g a 2}-1.428 22.703 -5.459 {c1* g a 3}P -4.873 24.127 -5.886 {n9 g a 3}-4.927 23.076 -4.881 {c8 g a 3}-4.379 23.052 -3.635 {n7 g a 3}-4.608 21.949 -2.972 {c5 g a 3}-5.374 21.199 -3.857 {c6 g a 3}-5.961 19.913 -3.733 {o6 g a 3}-5.889 19.13 -2.767 {c6 g a 3}P -5.961 19.913 -3.733 {n1 g a 3}-6.676 19.528 -4.845 {c2 g a 3}-6.79 20.319 -5.948 {n2 g a 3}-7.507 19.824 -6.972 {c2 g a 3}P -6.79 20.319 -5.948 {n3 g a 3}-6.221 21.515 -6.135 {c4 g a 3}-5.559 21.884 -5.027 {c5 g a 3}-5.374 21.199 -3.857 {n9 g a 3}P -4.927 23.076 -4.881 {c4 g a 3}-5.559 21.884 -5.027 {n3 g a 3}-6.221 21.515 -6.135 @vectorlist {C} color= yellow master= {strand a} {c1* c a 6}P -18.465 18.153 -0.943 {n1 c a 6}-17.362 18.863 -0.285 {c2 c a 6}-16.746 18.202 0.743 {o2 c a 6}-17.156 17.086 1.068 {c2 c a 6}P -16.746 18.202 0.743 {n3 c a 6}-15.716 18.818 1.397 {c4 c a 6}-15.304 20.067 1.072 {n4 c a 6}-14.297 20.684 1.713 {c4 c a 6}P -15.304 20.067 1.072 {c5 c a 6}-15.96 20.748 0.009 {c6 c a 6}-16.95 20.112 -0.623 {n1 c a 6}-17.362 18.863 -0.285 {c1* c a 7}P -19.46 17.151 4.396 {n1 c a 7}-18.54 18.291 4.436 {c2 c a 7}-17.477 18.137 5.303 {o2 c a 7}-17.388 17.139 6.011 {c2 c a 7}P -17.477 18.137 5.303 {n3 c a 7}-16.561 19.146 5.339 {c4 c a 7}-16.686 20.246 4.551 {n4 c a 7}-15.756 21.19 4.645 {c4 c a 7}P -16.686 20.246 4.551 {c5 c a 7}-17.786 20.383 3.675 {c6 c a 7}-18.688 19.382 3.644 {n1 c a 7}-18.54 18.291 4.436 {c1* c a 8}P -19.179 17.832 10.028 {n1 c a 8}-18.615 19.045 9.432 {c2 c a 8}-17.421 19.394 10.015 {o2 c a 8}-17.006 18.708 10.962 {c2 c a 8}P -17.421 19.394 10.015 {n3 c a 8}-16.791 20.501 9.521 {c4 c a 8}-17.327 21.211 8.498 {n4 c a 8}-16.7 22.298 8.013 {c4 c a 8}P -17.327 21.211 8.498 {c5 c a 8}-18.552 20.793 7.879 {c6 c a 8}-19.158 19.702 8.377 {n1 c a 8}-18.615 19.045 9.432 @vectorlist {G} color= sea master= {strand b} {c1* g b 9}P -10.984 22.529 14.513 {n9 g b 9}-11.633 22.963 13.276 {c8 g b 9}-11.373 24.078 12.533 {n7 g b 9}-12.124 24.204 11.461 {c5 g b 9}-12.944 23.076 11.523 {c6 g b 9}-13.986 22.618 10.669 {o6 g b 9}-14.407 23.137 9.632 {c6 g b 9}P -13.986 22.618 10.669 {n1 g b 9}-14.564 21.446 11.074 {c2 g b 9}-14.194 20.781 12.186 {n2 g b 9}-14.864 19.678 12.506 {c2 g b 9}P -14.194 20.781 12.186 {n3 g b 9}-13.232 21.182 13.022 {c4 g b 9}-12.653 22.33 12.631 {c5 g b 9}-12.944 23.076 11.523 {n9 g b 9}P -11.633 22.963 13.276 {c4 g b 9}-12.653 22.33 12.631 {n3 g b 9}-13.232 21.182 13.022 {c1* g b 10}P -11.691 18.116 11.505 {n9 g b 10}-11.85 19.041 10.38 {c8 g b 10}-11.117 20.124 10.028 {n7 g b 10}-11.553 20.724 8.938 {c5 g b 10}-12.656 19.966 8.551 {c6 g b 10}-13.543 20.083 7.457 {o6 g b 10}-13.546 20.947 6.567 {c6 g b 10}P -13.543 20.083 7.457 {n1 g b 10}-14.51 19.098 7.416 {c2 g b 10}-14.573 18.112 8.36 {n2 g b 10}-15.571 17.228 8.24 {c2 g b 10}P -14.573 18.112 8.36 {n3 g b 10}-13.773 17.942 9.405 {c4 g b 10}-12.836 18.923 9.432 {c5 g b 10}-12.656 19.966 8.551 {n9 g b 10}P -11.85 19.041 10.38 {c4 g b 10}-12.836 18.923 9.432 {c5 g b 10}-12.656 19.966 8.551 {n3 g b 10}-13.773 17.942 9.405 {c1* g b 11}P -12.937 14.312 7.359 {n9 g b 11}-12.623 15.505 6.602 {c8 g b 11}-11.647 16.409 6.829 {n7 g b 11}-11.698 17.455 6.037 {c5 g b 11}-12.796 17.2 5.219 {c6 g b 11}-13.365 17.901 4.129 {o6 g b 11}-12.97 18.968 3.635 {c6 g b 11}P -13.365 17.901 4.129 {n1 g b 11}-14.466 17.309 3.568 {c2 g b 11}-14.976 16.133 4.022 {n2 g b 11}-16.063 15.638 3.408 {c2 g b 11}P -14.976 16.133 4.022 {n3 g b 11}-14.459 15.423 5.018 {c4 g b 11}-13.361 15.995 5.561 {c5 g b 11}-12.796 17.2 5.219 {n9 g b 11}P -12.623 15.505 6.602 {c4 g b 11}-13.361 15.995 5.561 {n3 g b 11}-14.459 15.423 5.018 @vectorlist {C} color= yellow master= {strand b} {c1* c b 14}P -9.703 14.876 -7.376 {n1 c b 14}-8.905 15.196 -6.193 {c2 c b 14}-8.596 16.535 -6.042 {o2 c b 14}-8.959 17.366 -6.874 {c2 c b 14}P -8.596 16.535 -6.042 {n3 c b 14}-7.851 16.875 -4.947 {c4 c b 14}-7.458 15.934 -4.035 {n4 c b 14}-6.699 16.308 -2.999 {c4 c b 14}P -7.458 15.934 -4.035 {c5 c b 14}-7.825 14.576 -4.2 {c6 c b 14}-8.537 14.268 -5.299 {n1 c b 14}-8.905 15.196 -6.193 {c1* c b 15}P -5.453 18.011 -9.948 {n1 c b 15}-5.018 17.695 -8.587 {c2 c b 15}-4.32 18.684 -7.933 {o2 c b 15}-4.112 19.767 -8.493 {c2 c b 15}P -4.32 18.684 -7.933 {n3 c b 15}-3.88 18.425 -6.66 {c4 c b 15}-4.142 17.248 -6.042 {n4 c b 15}-3.723 17.034 -4.8 {c4 c b 15}P -4.142 17.248 -6.042 {c5 c b 15}-4.861 16.247 -6.731 {c6 c b 15}-5.273 16.514 -7.973 {n1 c b 15}-5.018 17.695 -8.587 {c1* c b 16}P -0.082 19.292 -10.157 {n1 c b 16}-0.368 18.441 -8.978 {c2 c b 16}0.133 18.992 -7.817 {o2 c b 16}0.747 20.047 -7.821 {c2 c b 16}P 0.133 18.992 -7.817 {n3 c b 16}-0.012 18.303 -6.651 {c4 c b 16}-0.712 17.139 -6.593 {n4 c b 16}-0.873 16.502 -5.428 {c4 c b 16}P -0.712 17.139 -6.593 {c5 c b 16}-1.222 16.596 -7.799 {c6 c b 16}-1.028 17.265 -8.938 {n1 c b 16}-0.368 18.441 -8.978 @vectorlist {GC Hb} color= gray master= {base-pr Hb} {n2 g a 1}P U 1.775 20.971 -6.095 {o2 c b 16}U 1.072 20.339 -7.274 {n3 c b 16}P U 0.319 18.577 -6.099 {n1 g a 1}U 1.039 19.173 -4.899 {o6 g a 1}P U 0.215 17.384 -3.742 {n4 c b 16}U -0.526 16.784 -4.889 {n2 g a 2}P U -2.887 21.228 -7.556 {o2 c b 15}U -3.709 20.249 -8.184 {n3 c b 15}P U -3.524 18.934 -6.337 {n1 g a 2}U -2.758 20.029 -5.644 {o6 g a 2}P U -2.7 18.714 -3.815 {n4 c b 15}U -3.397 17.568 -4.486 {n2 g a 3}P U -7.863 19.222 -6.948 {o2 c b 14}U -8.603 17.968 -6.898 {n3 c b 14}P U -7.568 17.515 -4.922 {n1 g a 3}U -6.959 18.888 -4.87 {o6 g a 3}P U -6.082 18.459 -2.822 {n4 c b 14}U -6.506 16.979 -2.944 {o2 c a 6}P U -16.898 16.744 1.621 {n2 g b 11}U -16.321 15.98 2.855 {n1 g b 11}P U -14.765 17.67 3.048 {n3 c a 6}U -15.417 18.457 1.917 {n4 c a 6}P U -13.976 20.27 2.177 {o6 g b 11}U -13.291 19.382 3.171 {o2 c a 7}P U -16.946 17.161 6.553 {n2 g b 10}U -16.013 17.206 7.698 {n1 g b 10}P U -15.002 19.11 6.918 {n3 c a 7}U -16.069 19.134 5.837 {n4 c a 7}P U -15.23 21.132 5.103 {o6 g b 10}U -14.072 21.005 6.109 {n2 g b 9}P U -15.397 19.437 12.122 {o2 c a 8}U -16.473 18.949 11.346 {n1 g b 9}P U -15.106 21.216 10.696 {n3 c a 8}U -16.249 20.731 9.899 {n4 c a 8}P U -16.152 22.498 8.4 {o6 g b 9}U -14.955 22.937 9.245 @group {labels} dominant @labellist {Drawn} color= gray {Minor} -15.56 15.642 -5.412 {Major groove} -9.277 20.292 1.96 @kinemage 4 @caption (B&T Fig. 7.2c) Z DNA duplex (lengthened by self-superposition). Sugar-phosphate backbone shown in white (strand a) or yellowtint (strand b); bases color-coded as G seagreen, C yellow, A pink, and U skyblue; base-pair Hbonds in gray. Z conformation was favored by de-methylation of some bases; crystal structure was 6 base-pairs long. (from PDB file 1D41) @onewidth @viewid {side} @zoom 1.18 @zslab 160 @center 11.694 17.082 12.921 @matrix .813957 -.027845 .580258 .579178 .116306 -.806862 -.045021 .992823 .110796 @2viewid {end} @2zoom 1.25 @2zslab 200 @2center 11.694 17.082 12.921 @2matrix .86555 .50079 .00606 .50075 -.86557 .00666 .00858 -.00273 -.99996 @3viewid {bb closeup} @3zoom 2.83 @3zslab 180 @3center 13.846 18.577 10.97 @3matrix -.79748 .18428 .57451 .42053 -.51303 .7483 .43264 .83835 .33164 @4viewid {stack closeup} @4zoom 2.7 @4zslab 180 @4center 15.329 18.983 11.063 @4matrix -.38443 .13757 -.91285 -.92144 -.11746 .37035 -.05627 .9835 .17191 @5viewid {major groove} @5zoom 1.30 @5zslab 190 @5center 11.694 17.082 12.921 @5matrix -0.95137 -0.18320 0.24764 0.30655 -0.64193 0.70282 0.03021 0.74456 0.66687 @6viewid {minor groove} @6zoom 1.30 @6zslab 290 @6center 14.225 16.393 11.498 @6matrix -0.99917 -0.03508 -0.02049 0.04058 -0.83695 -0.54578 0.00199 -0.54616 0.83768 @group {Z DNA} @subgroup dominant {sugar-phos} @vectorlist {mc} color= white master= {strand a} {o5* c a 1}P 7.426 12.471 -3.857 {c5* c a 1}7.145 13.59 -2.99 {c4* c a 1}8.34 14.468 -2.775 {o4* c a 1}9.536 13.595 -2.318 {c3* c a 1}P 8.976 15.174 -3.929 {c2* c a 1}10.201 14.303 -4.481 {c1* c a 1}10.629 13.819 -3.077 {o4* c a 1}9.536 13.595 -2.318 {c4* c a 1}P 8.34 14.468 -2.775 {c3* c a 1}8.976 15.174 -3.929 {o3* c a 1}9.456 16.428 -3.547 {p g a 2}8.441 17.715 -3.66 {o1p g a 2}9.483 18.747 -3.422 {o2p g a 2}P 7.543 17.393 -4.673 {p g a 2}8.441 17.715 -3.66 {o5* g a 2}7.314 17.486 -2.57 {c5* g a 2}7.689 17.792 -1.314 {c4* g a 2}6.468 17.76 -0.515 {o4* g a 2}6.126 16.389 -0.595 {c3* g a 2}P 6.999 17.932 1.023 {c2* g a 2}6.291 16.996 1.882 {c1* g a 2}5.889 15.839 0.782 {o4* g a 2}P 6.126 16.389 -0.595 {c1* g a 2}5.889 15.839 0.782 {c4* g a 2}P 6.468 17.76 -0.515 {c3* g a 2}6.999 17.932 1.023 {o3* g a 2}6.757 19.297 1.32 {p u a 3}7.958 20.34 1.908 {o1p u a 3}6.918 21.43 2.212 {o2p u a 3}P 8.749 20.478 0.626 {p u a 3}7.958 20.34 1.908 {o5* u a 3}8.792 19.755 3.159 {c5* u a 3}9.303 20.713 4.112 {c4* u a 3}10.506 19.861 4.398 {o4* u a 3}10.234 18.517 4.836 {c3* u a 3}P 11.282 19.616 3.112 {c2* u a 3}11.159 18.137 2.684 {c1* u a 3}11.085 17.631 4.266 {o4* u a 3}10.234 18.517 4.836 {c4* u a 3}P 10.506 19.861 4.398 {c3* u a 3}11.282 19.616 3.112 {o3* u a 3}12.569 20.08 3.481 {p a a 4}12.951 21.697 3.298 {o1p a a 4}14.361 21.604 2.941 {o2p a a 4}P 12.114 22.341 2.349 {p a a 4}12.951 21.697 3.298 {o5* a a 4}12.591 22.49 4.652 {c5* a a 4}13.086 22.014 5.936 {c4* a a 4}12.399 22.902 6.907 {o4* a a 4}11.037 22.714 6.7 {c3* a a 4}P 12.686 22.499 8.357 {c2* a a 4}11.38 22.706 9.05 {c1* a a 4}10.24 22.661 8.035 {o4* a a 4}11.037 22.714 6.7 {c4* a a 4}P 12.399 22.902 6.907 {c3* a a 4}12.686 22.499 8.357 {o3* a a 4}13.867 23.367 8.479 {p c a 5}14.584 23.38 9.926 {o1p c a 5}15.901 24.039 9.621 {o2p c a 5}P 13.466 23.845 10.693 {p c a 5}14.584 23.38 9.926 {o5* c a 5}14.698 21.86 10.535 {c5* c a 5}15.566 21.829 11.789 {c4* c a 5}15.528 20.321 12.006 {o4* c a 5}14.151 20.006 12.27 {c3* c a 5}P 15.666 19.358 10.785 {c2* c a 5}14.441 18.677 10.356 {c1* c a 5}13.741 18.793 11.727 {o4* c a 5}14.151 20.006 12.27 {c4* c a 5}P 15.528 20.321 12.006 {c3* c a 5}15.666 19.358 10.785 {o3* c a 5}16.537 18.258 11.207 {p g a 2x} 18.163 18.661 11.032 {o1p g a 2x} 18.541 17.248 11.296 {o2p g a 2x} P 18.33 19.582 10.003 {p g a 2x} 18.163 18.661 11.032 {o5* g a 2x} 18.522 19.772 12.103 {c5* g a 2x} 18.6 19.317 13.367 {c4* g a 2x} 19.177 20.408 14.148 {o4* g a 2x} 18.157 21.383 14.049 {c3* g a 2x} P 19.06 19.889 15.695 {c2* g a 2x} 18.598 20.984 16.534 {c1* g a 2x} 17.795 21.887 15.416 {o4* g a 2x} 18.157 21.383 14.049 {c4* g a 2x} P 19.177 20.408 14.148 {c3* g a 2x} 19.06 19.889 15.695 {o3* g a 2x} 20.365 19.427 16.002 {p u a 3x} 20.674 17.878 16.619 {o1p u a 3x} 22.136 18.245 16.918 {o2p u a 3x} P 20.403 17.099 15.35 {p u a 3x} 20.674 17.878 16.619 {o5* u a 3x} 19.75 17.467 17.876 {c5* u a 3x} 20.327 16.565 18.846 {c4* u a 3x} 18.99 15.949 19.142 {o4* u a 3x} 17.957 16.859 19.562 {c3* u a 3x} P 18.393 15.373 17.865 {c2* u a 3x} 17.171 16.206 17.42 {c1* u a 3x} 16.766 16.55 18.996 {o4* u a 3x} 17.957 16.859 19.562 {c4* u a 3x} P 18.99 15.949 19.142 {c3* u a 3x} 18.393 15.373 17.865 {o3* u a 3x} 18.157 14.033 18.258 {p a a 4x} 19.371 12.895 18.097 {o1p a a 4x} 18.591 11.711 17.76 {o2p a a 4x} P 20.347 13.285 17.142 {p a a 4x} 19.371 12.895 18.097 {o5* a a 4x} 20.237 12.839 19.453 {c5* a a 4x} 19.576 12.668 20.74 {c4* a a 4x} 20.686 12.841 21.709 {o4* a a 4x} 21.199 14.113 21.48 {c3* a a 4x} P 20.192 12.819 23.159 {c2* a a 4x} 21.019 13.862 23.835 {c1* a a 4x} 21.547 14.855 22.802 {o4* a a 4x} 21.199 14.113 21.48 {c4* a a 4x} P 20.686 12.841 21.709 {c3* a a 4x} 20.192 12.819 23.159 {o3* a a 4x} 20.359 11.365 23.308 {p c a 5x} 20.013 10.762 24.765 {o1p c a 5x} 19.931 9.286 24.487 {o2p c a 5x} P 20.97 11.516 25.52 {p c a 5x} 20.013 10.762 24.765 {o5* c a 5x} 18.636 11.428 25.361 {c5* c a 5x} 18.176 10.713 26.627 {c4* c a 5x} 16.886 11.498 26.828 {o4* c a 5x} 17.295 12.855 27.068 {c3* c a 5x} P 15.983 11.834 25.6 {c2* c a 5x} 16. 13.228 25.145 {c1* c a 5x} 16.446 13.803 26.507 {o4* c a 5x} 17.295 12.855 27.068 {c4* c a 5x} P 16.886 11.498 26.828 {c3* c a 5x} 15.983 11.834 25.6 {o3* c a 5x} 14.595 11.632 26.023 {p g a 6x} 13.93 10.171 25.834 {o1p g a 6x} 12.496 10.518 26.181 {o2p g a 6x} P 14.317 9.595 24.611 {p g a 6x} 13.93 10.171 25.834 {o5* g a 6x} 14.8 9.166 26.855 {c5* g a 6x} 14.434 9.5 28.243 {c4* g a 6x} 15.113 8.221 28.911 {o4* g a 6x} 16.486 8.55 28.881 {c4* g a 6x} P 15.113 8.221 28.911 {c3* g a 6x} 14.541 8.132 30.2 {o3* g a 6x} 14.795 6.793 30.743 {c3* g a 6x} P 14.541 8.132 30.2 {c2* g a 6x} 15.531 8.902 30.905 {c1* g a 6x} 16.853 8.854 30.196 {o4* g a 6x} 16.486 8.55 28.881 @vectorlist {mc} color= yellowtint master= {strand b} {o5* c b 7x} P 14.304 22.89 30.263 {o5* c b 7x} 14.304 22.89 30.263 {c5* c b 7x} 13.376 22.767 29.171 {c4* c b 7x} 12.922 21.295 29.037 {o4* c b 7x} 14.041 20.39 28.699 {c3* c b 7x} P 12.402 20.524 30.222 {c2* c b 7x} 13.576 19.491 30.629 {c2* c b 7x} P 13.576 19.491 30.629 {c1* c b 7x} 14.08 19.123 29.306 {o4* c b 7x} 14.041 20.39 28.699 {c4* c b 7x} P 12.922 21.295 29.037 {c3* c b 7x} 12.402 20.524 30.222 {o3* c b 7x} 11.267 19.768 29.988 {p g b 8x} 9.846 20.314 29.951 {o1p g b 8x} 9.72 21.072 31.163 {o2p g b 8x} P 9.007 19.19 29.857 {p g b 8x} 9.846 20.314 29.951 {o5* g b 8x} 9.512 21.162 28.617 {c5* g b 8x} 9.542 20.556 27.337 {c4* g b 8x} 9.484 21.819 26.48 {o4* g b 8x} 10.53 22.726 26.614 {c3* g b 8x} P 9.613 21.177 24.951 {c2* g b 8x} 10.346 22.196 24.231 {c1* g b 8x} 11.028 22.943 25.212 {o4* g b 8x} 10.53 22.726 26.614 {c4* g b 8x} P 9.484 21.819 26.48 {c3* g b 8x} 9.613 21.177 24.951 {o3* g b 8x} 8.246 21.007 24.64 {p u b 9x} 7.456 19.7 24.268 {o1p u b 9x} 5.993 20.057 24.022 {o2p u b 9x} P 7.443 18.829 25.35 {p u b 9x} 7.456 19.7 24.268 {o5* u b 9x} 8.277 19.113 23.075 {c5* u b 9x} 7.834 18.414 22.004 {c4* u b 9x} 8.78 17.177 21.931 {o4* u b 9x} 10.099 17.563 21.374 {c3* u b 9x} P 9.206 16.332 23.146 {c2* u b 9x} 10.575 16.829 23.58 {c1* u b 9x} 11.11 16.989 22.075 {o4* u b 9x} 10.099 17.563 21.374 {c4* u b 9x} P 8.78 17.177 21.931 {c3* u b 9x} 9.206 16.332 23.146 {o3* u b 9x} 9.234 15.031 22.757 {p a b 10x} 8.019 13.968 22.748 {o1p a b 10x} 7.18 14.24 23.916 {o2p a b 10x} P 8.529 12.745 22.39 {p a b 10x} 8.019 13.968 22.748 {o5* a b 10x} 7.134 14.285 21.354 {c5* a b 10x} 7.435 13.799 20.022 {c4* a b 10x} 6.457 14.423 19.188 {o4* a b 10x} 6.335 15.863 19.413 {c3* a b 10x} P 6.826 14.404 17.745 {c2* a b 10x} 6.73 15.754 17.145 {c1* a b 10x} 6.32 16.734 18.313 {o4* a b 10x} 6.335 15.863 19.413 {c4* a b 10x} P 6.457 14.423 19.188 {c3* a b 10x} 6.826 14.404 17.745 {o3* a b 10x} 5.965 13.487 17.148 {p c b 11x} 6.341 12.129 16.337 {o1p c b 11x} 5.052 11.553 15.683 {o2p c b 11x} P 6.982 11.329 17.414 {p c b 11x} 6.341 12.129 16.337 {o5* c b 11x} 7.344 12.653 15.262 {c5* c b 11x} 7.989 11.91 14.373 {c4* c b 11x} 9.42 12.157 14.12 {o4* c b 11x} 9.49 13.585 13.759 {c3* c b 11x} P 10.313 12.073 15.369 {c2* c b 11x} 10.484 13.482 15.783 {c1* c b 11x} 10.507 14.217 14.354 {o4* c b 11x} 9.49 13.585 13.759 {c4* c b 11x} P 9.42 12.157 14.12 {c3* c b 11x} 10.313 12.073 15.369 {o3* c b 11x} 11.535 11.475 14.993 {p g b 8}11.417 9.867 15.297 {o1p g b 8}10.84 9.394 16.523 {o2p g b 8}P 12.808 9.695 15.184 {p g b 8}11.417 9.867 15.297 {o5* g b 8}10.827 9.142 13.979 {c5* g b 8}11.319 9.456 12.688 {c4* g b 8}10.239 8.77 11.854 {o4* g b 8}8.934 9.23 12.003 {c3* g b 8}P 10.709 9.186 10.314 {c2* g b 8}9.45 9.309 9.611 {c1* g b 8}8.478 9.54 10.605 {o4* g b 8}8.934 9.23 12.003 {c4* g b 8}P 10.239 8.77 11.854 {c3* g b 8}10.709 9.186 10.314 {o3* g b 8}11.53 8.08 10.002 {p u b 9}13.051 8.039 9.607 {o1p u b 9}13.464 6.589 9.37 {o2p u b 9}P 13.83 8.471 10.673 {p u b 9}13.051 8.039 9.607 {o5* u b 9}13.135 9.031 8.403 {c5* u b 9}13.946 8.982 7.32 {c4* u b 9}14.549 10.417 7.223 {o4* u b 9}13.551 11.365 6.672 {c3* u b 9}P 15.089 11.218 8.422 {c2* u b 9}13.985 12.165 8.863 {c1* u b 9}13.558 12.534 7.361 {o4* u b 9}13.551 11.365 6.672 {c4* u b 9}P 14.549 10.417 7.223 {c3* u b 9}15.089 11.218 8.422 {o3* u b 9}16.199 11.884 8.01 {p a b 10}17.724 11.357 7.983 {o1p a b 10}17.922 10.505 9.157 {o2p a b 10}P 18.527 12.403 7.603 {p a b 10}17.724 11.357 7.983 {o5* a b 10}17.868 10.417 6.597 {c5* a b 10}18.12 10.906 5.256 {c4* a b 10}18.051 9.739 4.434 {o4* a b 10}16.866 8.921 4.685 {c4* a b 10}P 18.051 9.739 4.434 {c3* a b 10}17.863 10.054 2.991 {o3* a b 10}19.078 9.756 2.379 {c3* a b 10}P 17.863 10.054 2.991 {c2* a b 10}16.73 9.295 2.415 {c1* a b 10}16.101 8.464 3.601 {o4* a b 10}16.866 8.921 4.685 {o3* a b 10}P 19.078 9.756 2.379 {p c b 11}20.058 10.748 1.543 {o1p c b 11}21.188 9.908 0.88 {o2p c b 11}P 20.45 11.712 2.604 {p c b 11}20.058 10.748 1.543 {o5* c b 11}19.089 11.347 0.476 {c5* c b 11}19.401 12.267 -0.427 {c4* c b 11}18.472 13.384 -0.678 {o4* c b 11}17.192 12.733 -1.013 {c3* c b 11}P 18.12 14.214 0.568 {c2* c b 11}16.819 13.667 1.007 {c1* c b 11}16.148 13.308 -0.408 {o4* c b 11}17.192 12.733 -1.013 {c4* c b 11}P 18.472 13.384 -0.678 {c3* c b 11}18.12 14.214 0.568 {o3* c b 11}18.027 15.568 0.18 {p g b 12}19.327 16.489 0.368 {o1p g b 12}19.983 16.227 1.613 {o2p g b 12}P 18.779 17.809 0.03 {p g b 12}19.327 16.489 0.368 {o5* g b 12}20.152 16.487 -1.09 {c5* g b 12}21.379 15.902 -1.191 {c4* g b 12}21.746 15.459 -2.615 {o4* g b 12}21.22 14.222 -2.602 {c4* g b 12}P 21.746 15.459 -2.615 {c3* g b 12}20.983 15.905 -3.854 {o3* g b 12}21.948 16.615 -4.409 {c3* g b 12}P 20.983 15.905 -3.854 {c2* g b 12}20.88 14.848 -4.864 {c1* g b 12}21.22 13.68 -3.939 {o4* g b 12}21.22 14.222 -2.602 @subgroup {AU base-pr} dominant @vectorlist {A a} color= pink master= {strand a} {c1* a a 4}P 10.24 22.661 8.035 {n9 a a 4}9.458 21.472 7.958 {c8 a a 4}8.164 21.428 7.832 {n7 a a 4}7.651 20.176 7.776 {c5 a a 4}8.795 19.435 7.855 {c6 a a 4}8.961 17.988 7.807 {n6 a a 4}7.839 17.16 7.585 {c6 a a 4}P 8.961 17.988 7.807 {n1 a a 4}10.164 17.476 7.895 {c2 a a 4}11.201 18.321 8.021 {n3 a a 4}11.155 19.661 8.071 {c4 a a 4}9.885 20.167 7.975 {c5 a a 4}8.795 19.435 7.855 {n9 a a 4}P 9.458 21.472 7.958 {c4 a a 4}9.885 20.167 7.975 {n3 a a 4}11.155 19.661 8.071 {c1* a a 4x} P 21.547 14.855 22.802 {n9 a a 4x} 20.903 16.123 22.702 {c8 a a 4x} 21.508 17.266 22.556 {n7 a a 4x} 20.675 18.331 22.479 {c5 a a 4x} 19.464 17.707 22.568 {c6 a a 4x} 18.126 18.28 22.508 {n6 a a 4x} 17.964 19.661 22.261 {c6 a a 4x} P 18.126 18.28 22.508 {n1 a a 4x} 17.084 17.492 22.609 {c2 a a 4x} 17.303 16.175 22.759 {n3 a a 4x} 18.489 15.551 22.822 {c4 a a 4x} 19.558 16.4 22.712 {c5 a a 4x} 19.464 17.707 22.568 {n9 a a 4x} P 20.903 16.123 22.702 {c4 a a 4x} 19.558 16.4 22.712 {n3 a a 4x} 18.489 15.551 22.822 @vectorlist {U} color= sky master= {strand a} {c1* u a 3}P 11.085 17.631 4.266 {n1 u a 3}10.285 16.351 4.282 {c2 u a 3}11.037 15.236 4.202 {o2 u a 3}12.285 15.274 4.103 {c2 u a 3}P 11.037 15.236 4.202 {n3 u a 3}10.407 14.042 4.13 {c4 u a 3}9.086 13.877 4.27 {o4 u a 3}8.602 12.702 4.159 {c4 u a 3}P 9.086 13.877 4.27 {c5 u a 3}8.3 15.032 4.328 {c6 u a 3}8.92 16.217 4.386 {n1 u a 3}10.285 16.351 4.282 {c1* u a 3x} P 16.766 16.55 18.996 {n1 u a 3x} 16.052 17.88 18.987 {c2 u a 3x} 14.711 17.779 18.907 {o2 u a 3x} 14.125 16.675 18.827 {c2 u a 3x} P 14.711 17.779 18.907 {n3 u a 3x} 13.988 18.917 18.813 {c4 u a 3x} 14.5 20.148 18.932 {o4 u a 3x} 13.72 21.15 18.801 {c4 u a 3x} P 14.5 20.148 18.932 {c5 u a 3x} 15.893 20.259 18.99 {c6 u a 3x} 16.613 19.133 19.069 {n1 u a 3x} 16.052 17.88 18.987 @vectorlist {A b} color= pink master= {strand b} {c1* a b 10x} P 6.32 16.734 18.313 {n9 a b 10x} 7.259 17.742 18.362 {c8 a b 10x} 6.847 19.044 18.506 {n7 a b 10x} 7.873 19.908 18.597 {c5 a b 10x} 8.993 19.103 18.393 {c6 a b 10x} 10.389 19.402 18.482 {n6 a b 10x} 10.776 20.725 18.607 {c6 a b 10x} P 10.389 19.402 18.482 {n1 a b 10x} 11.263 18.383 18.276 {c2 a b 10x} 10.839 17.137 18.079 {n3 a b 10x} 9.512 16.731 18.044 {c4 a b 10x} 8.664 17.738 18.236 {c5 a b 10x} 8.993 19.103 18.393 {n9 a b 10x} P 7.259 17.742 18.362 {c4 a b 10x} 8.664 17.738 18.236 {n3 a b 10x} 9.512 16.731 18.044 {c1* a b 10}P 16.101 8.464 3.601 {n9 a b 10}14.76 8.78 3.667 {c8 a b 10}13.837 7.777 3.835 {n7 a b 10}12.579 8.24 3.94 {c5 a b 10}12.719 9.61 3.72 {c6 a b 10}11.768 10.674 3.813 {n6 a b 10}10.429 10.355 3.961 {c6 a b 10}P 11.768 10.674 3.813 {n1 a b 10}12.215 11.937 3.587 {c2 a b 10}13.504 12.185 3.368 {n3 a b 10}14.515 11.234 3.328 {c4 a b 10}14.065 10. 3.539 {c5 a b 10}12.719 9.61 3.72 {n9 a b 10}P 14.76 8.78 3.667 {c4 a b 10}14.065 10. 3.539 {n3 a b 10}14.515 11.234 3.328 @vectorlist {U b} color= sky master= {strand b} {c1* u b 9x} P 11.11 16.989 22.075 {n1 u b 9x} 12.204 18.165 22.121 {c2 u b 9x} 13.419 17.673 22.264 {o2 u b 9x} 13.641 16.514 22.338 {c2 u b 9x} P 13.419 17.673 22.264 {n3 u b 9x} 14.394 18.618 22.265 {c4 u b 9x} 14.214 19.93 22.173 {o4 u b 9x} 15.245 20.589 22.277 {c4 u b 9x} P 14.214 19.93 22.173 {c5 u b 9x} 12.875 20.392 22.001 {c6 u b 9x} 11.877 19.541 21.926 {n1 u b 9x} 12.204 18.165 22.121 {c1* u b 9}P 13.558 12.534 7.361 {n1 u b 9}11.995 12.901 7.426 {c2 u b 9}11.821 14.201 7.559 {o2 u b 9}12.718 14.97 7.612 {c2 u b 9}P 11.821 14.201 7.559 {n3 u b 9}10.517 14.579 7.575 {c4 u b 9}9.466 13.77 7.507 {o4 u b 9}8.384 14.339 7.622 {c4 u b 9}P 9.466 13.77 7.507 {c5 u b 9}9.727 12.377 7.346 {c6 u b 9}10.96 11.932 7.257 {n1 u b 9}11.995 12.901 7.426 @vectorlist {bp Hb} color= gray master= {base-pr Hb} {n6 a a 4}P U 7.972 16.473 7.594 {o4 u b 9}U 8.251 15.026 7.613 {n1 a a 4}P U 10.248 16.785 7.819 {n3 u b 9}U 10.433 15.27 7.651 {o4 u a 3}P U 9.031 12.151 4.113 {n6 a b 10}U 10. 10.906 4.007 {n3 u a 3}P U 10.855 13.521 3.996 {n1 a b 10}U 11.767 12.458 3.721 {n6 a b 10}P U 11.467 20.825 18.653 {o4 u a 3}U 13.029 21.05 18.755 {n3 u a 3}P U 13.314 18.785 18.68 {n1 a b 10}U 11.937 18.515 18.409 {o4 u b 9}P U 15.907 20.363 22.273 {n6 a a 4}U 17.302 19.887 22.265 {n1 a a 4}P U 16.443 17.76 22.527 {n3 u b 9}U 15.035 18.35 22.347 @subgroup {GC base-pr} dominant @vectorlist {G} color= sea master= {strand a} {c1* g a 2}P 5.889 15.839 0.782 {n9 g a 2}6.488 14.658 0.841 {c8 g a 2}5.854 13.47 0.889 {n7 g a 2}6.674 12.393 0.968 {c5 g a 2}7.917 13.007 0.812 {c6 g a 2}9.244 12.4 0.816 {o6 g a 2}9.45 11.154 0.817 {c6 g a 2}P 9.244 12.4 0.816 {n1 g a 2}10.245 13.3 0.688 {c2 g a 2}10.011 14.581 0.578 {n2 g a 2}10.998 15.34 0.461 {c2 g a 2}P 10.011 14.581 0.578 {n3 g a 2}8.916 15.232 0.62 {c4 g a 2}7.874 14.361 0.725 {c5 g a 2}7.917 13.007 0.812 {n9 g a 2}P 6.488 14.658 0.841 {c4 g a 2}7.874 14.361 0.725 {n3 g a 2}8.916 15.232 0.62 {c1* g a 2x} P 17.795 21.887 15.416 {n9 g a 2x} 16.472 21.954 15.472 {c8 g a 2x} 15.755 23.095 15.499 {n7 g a 2x} 14.413 22.919 15.579 {c5 g a 2x} 14.33 21.533 15.448 {c6 g a 2x} 13.144 20.682 15.466 {o6 g a 2x} 11.96 21.122 15.457 {c6 g a 2x} P 13.144 20.682 15.466 {n1 g a 2x} 13.429 19.364 15.362 {c2 g a 2x} 14.657 18.93 15.261 {n2 g a 2x} 14.826 17.694 15.167 {c2 g a 2x} P 14.657 18.93 15.261 {n3 g a 2x} 15.766 19.558 15.293 {c4 g a 2x} 15.527 20.896 15.374 {c5 g a 2x} 14.33 21.533 15.448 {n9 g a 2x} P 16.472 21.954 15.472 {c4 g a 2x} 15.527 20.896 15.374 {n3 g a 2x} 15.766 19.558 15.293 {c1* g a 6x} P 16.853 8.854 30.196 {n9 g a 6x} 17.705 10.067 30.144 {c8 g a 6x} 19.005 9.964 30.078 {n7 g a 6x} 19.59 11.153 30.075 {c5 g a 6x} 18.472 12.066 30.052 {c6 g a 6x} 18.444 13.467 29.931 {o6 g a 6x} 19.415 14.266 29.777 {c6 g a 6x} P 18.444 13.467 29.931 {n1 g a 6x} 17.194 14.069 29.998 {c2 g a 6x} 16.17 13.27 29.913 {n2 g a 6x} 14.998 13.843 29.924 {c2 g a 6x} P 16.17 13.27 29.913 {n3 g a 6x} 16.062 11.918 30.14 {c4 g a 6x} 17.336 11.403 30.09 {c5 g a 6x} 18.472 12.066 30.052 {n9 g a 6x} P 17.705 10.067 30.144 {c4 g a 6x} 17.336 11.403 30.09 {n3 g a 6x} 16.062 11.918 30.14 @vectorlist {C} color= yellow master= {strand a} {c1* c a 1}P 10.629 13.819 -3.077 {n1 c a 1}11.43 12.584 -3.282 {c2 c a 1}12.794 12.796 -3.491 {o2 c a 1}13.367 13.902 -3.624 {c2 c a 1}P 12.794 12.796 -3.491 {n3 c a 1}13.532 11.69 -3.587 {c4 c a 1}12.959 10.403 -3.526 {n4 c a 1}13.808 9.307 -3.64 {c4 c a 1}P 12.959 10.403 -3.526 {c5 c a 1}11.571 10.193 -3.242 {c6 c a 1}10.911 11.343 -3.119 {n1 c a 1}11.43 12.584 -3.282 {c1* c a 5}P 13.741 18.793 11.727 {n1 c a 5}12.225 18.631 11.604 {c2 c a 5}11.765 17.358 11.471 {o2 c a 5}12.442 16.393 11.498 {c2 c a 5}P 11.765 17.358 11.471 {n3 c a 5}10.403 17.258 11.428 {c4 c a 5}9.558 18.354 11.361 {n4 c a 5}8.234 18.087 11.256 {c4 c a 5}P 9.558 18.354 11.361 {c5 c a 5}10.156 19.626 11.541 {c6 c a 5}11.463 19.754 11.662 {n1 c a 5}12.225 18.631 11.604 {c1* c a 5x} P 16.446 13.803 26.507 {n1 c a 5x} 17.058 15.197 26.36 {c2 c a 5x} 16.182 16.225 26.207 {o2 c a 5x} 15.008 16.117 26.234 {c2 c a 5x} P 16.182 16.225 26.207 {n3 c a 5x} 16.771 17.456 26.142 {c4 c a 5x} 18.142 17.645 26.074 {n4 c a 5x} 18.568 18.925 25.946 {c4 c a 5x} P 18.142 17.645 26.074 {c5 c a 5x} 18.949 16.498 26.276 {c6 c a 5x} 18.412 15.302 26.418 {n1 c a 5x} 17.058 15.197 26.36 @vectorlist {G b} color= sea master= {strand b} {c1* g b 8x} P 11.028 22.943 25.212 {n9 g b 8x} 12.428 22.807 25.284 {c8 g b 8x} 13.36 23.752 25.214 {n7 g b 8x} 14.627 23.217 25.382 {c5 g b 8x} 14.387 21.868 25.438 {c6 g b 8x} 15.359 20.827 25.632 {o6 g b 8x} 16.608 21.023 25.587 {c6 g b 8x} P 15.359 20.827 25.632 {n1 g b 8x} 14.907 19.559 25.747 {c2 g b 8x} 13.559 19.359 25.749 {n2 g b 8x} 13.1 18.187 25.869 {c2 g b 8x} P 13.559 19.359 25.749 {n3 g b 8x} 12.571 20.27 25.581 {c4 g b 8x} 13.083 21.521 25.485 {c5 g b 8x} 14.387 21.868 25.438 {n9 g b 8x} P 12.428 22.807 25.284 {c4 g b 8x} 13.083 21.521 25.485 {n3 g b 8x} 12.571 20.27 25.581 {c1* g b 8}P 8.478 9.54 10.605 {n9 g b 8}7.902 10.824 10.672 {c8 g b 8}6.618 11.163 10.618 {n7 g b 8}6.456 12.53 10.774 {c5 g b 8}7.747 12.992 10.807 {c6 g b 8}8.171 14.354 10.98 {o6 g b 8}7.38 15.341 10.937 {c6 g b 8}P 8.171 14.354 10.98 {n1 g b 8}9.498 14.592 11.073 {c2 g b 8}10.34 13.521 11.073 {n2 g b 8}11.587 13.706 11.173 {c2 g b 8}P 10.34 13.521 11.073 {n3 g b 8}10.037 12.21 10.923 {c4 g b 8}8.696 12.032 10.849 {c5 g b 8}7.747 12.992 10.807 {n9 g b 8}P 7.902 10.824 10.672 {c4 g b 8}8.696 12.032 10.849 {n3 g b 8}10.037 12.21 10.923 {c1* g b 12}P 21.22 13.68 -3.939 {n9 g b 12}20.347 12.592 -3.975 {c8 g b 12}20.68 11.308 -4.005 {n7 g b 12}19.569 10.532 -3.981 {c5 g b 12}18.503 11.409 -3.912 {c6 g b 12}17.087 11.144 -3.961 {o6 g b 12}16.632 9.941 -3.957 {c6 g b 12}P 17.087 11.144 -3.961 {n1 g b 12}16.234 12.243 -3.981 {c2 g b 12}16.879 13.382 -3.949 {n2 g b 12}16.218 14.488 -3.908 {c2 g b 12}P 16.879 13.382 -3.949 {n3 g b 12}18.115 13.773 -4.003 {c4 g b 12}18.93 12.709 -3.977 {c5 g b 12}18.503 11.409 -3.912 {n9 g b 12}P 20.347 12.592 -3.975 {c4 g b 12}18.93 12.709 -3.977 {n3 g b 12}18.115 13.773 -4.003 @vectorlist {C b} color= yellow master= {strand b} {c1* c b 7x} P 14.08 19.123 29.306 {n1 c b 7x} 15.566 18.732 29.318 {c2 c b 7x} 15.683 17.337 29.544 {o2 c b 7x} 14.764 16.537 29.665 {c2 c b 7x} P 15.683 17.337 29.544 {n3 c b 7x} 16.994 16.891 29.614 {c4 c b 7x} 18.067 17.718 29.55 {n4 c b 7x} 19.29 17.177 29.657 {c4 c b 7x} P 18.067 17.718 29.55 {c5 c b 7x} 17.905 19.117 29.428 {c6 c b 7x} 16.641 19.567 29.379 {n1 c b 7x} 15.566 18.732 29.318 {c1* c b 11x} P 10.507 14.217 14.354 {n1 c b 11x} 10.171 15.64 14.441 {c2 c b 11x} 11.305 16.374 14.778 {o2 c b 11x} 12.456 16.003 14.695 {c2 c b 11x} P 11.305 16.374 14.778 {n3 c b 11x} 11.037 17.729 14.824 {c4 c b 11x} 9.806 18.354 14.694 {n4 c b 11x} 9.773 19.706 14.884 {c4 c b 11x} P 9.806 18.354 14.694 {c5 c b 11x} 8.711 17.451 14.527 {c6 c b 11x} 8.894 16.165 14.339 {n1 c b 11x} 10.171 15.64 14.441 {c1* c b 11}P 16.148 13.308 -0.408 {n1 c b 11}15.081 12.311 -0.295 {c2 c b 11}13.886 12.935 0.054 {o2 c b 11}13.635 14.117 -0.038 {c2 c b 11}P 13.886 12.935 0.054 {n3 c b 11}12.843 12.03 0.124 {c4 c b 11}12.91 10.65 0.007 {n4 c b 11}11.756 9.952 0.222 {c4 c b 11}P 12.91 10.65 0.007 {c5 c b 11}14.235 10.146 -0.174 {c5m c b 11}14.531 8.7 -0.186 {n1 c b 11}P 15.081 12.311 -0.295 {c6 c b 11}15.257 10.941 -0.386 {c5 c b 11}14.235 10.146 -0.174 @vectorlist {bp Hb} color= gray master= {base-pr Hb} {o2 c a 5}P U 12.231 15.73 11.418 {n2 g b 8}U 11.798 14.369 11.253 {n1 g b 8}P U 9.721 15.25 11.161 {n3 c a 5}U 10.18 16.6 11.34 {n4 c a 5}P U 8.027 17.423 11.179 {o6 g b 8}U 7.587 16.005 11.014 {n2 g a 2}P U 11.624 15.05 0.343 {o2 c b 11}U 13.009 14.407 0.08 {n3 c b 11}P U 12.226 12.332 0.258 {n1 g a 2}U 10.862 12.998 0.554 {o6 g a 2}P U 10.055 10.839 0.661 {n4 c b 11}U 11.151 10.267 0.378 {o2 c a 1}P U 14.049 14.042 -3.692 {n2 g b 12}U 15.536 14.348 -3.84 {n3 c a 1}P U 14.211 11.829 -3.686 {n1 g b 12}U 15.555 12.104 -3.882 {n4 c a 1}P U 14.487 9.459 -3.716 {o6 g b 12}U 15.953 9.789 -3.881 {o2 c b 11}P U 13.018 16.404 14.807 {n2 g a 2}U 14.264 17.293 15.055 {n1 g a 2}P U 12.861 18.976 15.234 {n3 c b 11}U 11.605 18.117 14.952 {n4 c b 11}P U 10.347 20.078 15.034 {o6 g a 2}U 11.386 20.75 15.307 {n2 g b 8}P U 13.57 17.677 25.959 {o2 c a 5}U 14.538 16.627 26.144 {n3 c a 5}P U 16.311 17.975 26.045 {n1 g b 8}U 15.367 19.04 25.844 {o6 g b 8}P U 17.082 20.515 25.674 {n4 c a 5}U 18.094 19.433 25.859 {o2 c b 7}P U 14.824 15.843 29.732 {n2 g a 6}U 14.938 14.537 29.857 {n1 g a 6}P U 17.145 14.761 29.904 {n3 c b 7}U 17.043 16.199 29.708 {n4 c b 7}P U 19.32 16.478 29.686 {o6 g a 6}U 19.385 14.965 29.748 @group {labels} dominant off @labellist {Drawn} color= gray {Minor groove} 21.554, 14.537, 9.689 { (Major)} 8.308, 18.984, 13.153 @kinemage 5 @caption Tyr tRNA - virtual backbone and all-atom bases. "Animate" cycles among the 4 stem-loops that make up the "cloverleaf" organization. "2Animate" gives a tour of features, including tertiary base interactions. Turn off "std bases" to see just the modified bases. (from PDB file 4TNA) @onewidth @zoom 1.12 @zslab 170 @ztran 0 @center 36.955 -1.450 20.901 @matrix -0.577720 0.043852 -0.815056 -0.728352 0.423034 0.539023 0.368433 0.905052 -0.212456 @2viewid {from ends} @2zoom 1.24 @2zslab 220 @2center 42.279 0.773 21.959 @2matrix 0.810308 -0.096243 -0.578047 -0.483078 0.448672 -0.751883 0.331717 0.888499 0.317070 @3viewid {CCA stem} @3zoom 2.22 @3zslab 220 @3center 28.640 -5.822 53.430 @3matrix 0.050909 -0.528344 -0.847502 -0.760524 -0.570532 0.309993 -0.647310 0.628765 -0.430864 @4viewid {dhU stem} @4zoom 2.04 @4zslab 150 @4center 43.631 6.607 27.245 @4matrix 0.165787 0.257638 0.951912 0.865481 0.424685 -0.265677 -0.472712 0.867908 -0.152573 @5viewid {anticod stem} @5zoom 2.22 @5zslab 150 @5center 48.801 -3.807 6.827 @5matrix -0.119535 0.004492 -0.992820 -0.869520 0.482195 0.106872 0.479213 0.876052 -0.053734 @6viewid {psUC stem} @6zoom 2.16 @6zslab 160 @6center 43.476 16.994 39.282 @6matrix 0.431351 0.638922 0.636957 -0.647042 0.711092 -0.275106 -0.628706 -0.293470 0.720141 @7viewid {3-base} @7zoom 3.14 @7zslab 170 @7center 42.641 1.524 19.047 @7matrix 0.500616 0.533557 -0.681689 -0.829876 0.519895 -0.202520 0.246351 0.667103 0.703054 @8viewid {loop corner} @8zoom 3.14 @8zslab 170 @8center 54.414 18.198 40.267 @8matrix -0.947326 0.230330 -0.222534 0.083171 0.847916 0.523564 0.309283 0.477478 -0.822410 @master {base-pr Hb} @master {std bases} @master {labels} @master {mod bases} @master {tertiary Hb} @group {virtual bb} dominant @vectorlist {virtual bb} color= white {p g 1}P 24.650 4.594 51.620 {c4* g 1}25.808 4.801 55.152 {c1* g 1}25.833 2.612 55.903 {c4* g 1}P 25.808 4.801 55.152 {p c 2}29.640 5.301 54.591 {c4* c 2}31.424 2.812 56.982 {c1* c 2}31.162 0.636 56.248 {c4* c 2}P 31.424 2.812 56.982 {p g 3}34.558 4.092 55.472 {c4* g 3}36.785 1.211 54.865 {c1* g 3}35.772 -0.434 53.651 {c4* g 3}P 36.785 1.211 54.865 {p g 4}38.845 2.801 51.914 {c4* g 4}40.197 -0.601 50.604 {c1* g 4}38.604 -1.895 49.532 {c4* g 4}P 40.197 -0.601 50.604 {p a 5}42.128 0.884 47.695 {c4* a 5}41.635 -1.650 44.871 {c1* a 5}39.448 -1.737 44.231 {c4* a 5}P 41.635 -1.650 44.871 {p u 6}42.767 0.450 41.759 {c4* u 6}40.165 -0.455 38.978 {c1* u 6}38.007 0.277 39.351 {c4* u 6}P 40.165 -0.455 38.978 {p u 7}41.128 2.411 36.444 {c4* u 7}37.856 2.971 34.421 {c1* u 7}36.824 4.578 35.717 {c4* u 7}P 37.856 2.971 34.421 {p u 8}37.555 4.171 31.327 {c4* u 8}39.756 7.096 29.890 {c1* u 8}42.014 6.669 29.700 {c4* u 8}P 39.756 7.096 29.890 {p a 9}38.558 5.617 26.671 {c4* a 9}38.039 7.190 23.227 {c1* a 9}39.461 6.015 21.854 {c4* a 9}P 38.039 7.190 23.227 {p 2mg 10}35.095 6.450 21.753 {c4* 2mg 10}32.816 3.488 20.998 {c1* 2mg 10}33.799 2.135 19.422 {c4* 2mg 10}P 32.816 3.488 20.998 {p c 11}33.284 1.751 24.235 {c4* c 11}33.585 -2.065 23.729 {c1* c 11}35.570 -2.576 22.635 {c4* c 11}P 33.585 -2.065 23.729 {p u 12}34.783 -3.267 27.298 {c4* u 12}37.888 -5.609 27.068 {c1* u 12}39.627 -4.594 25.946 {c4* u 12}P 37.888 -5.609 27.068 {p c 13}39.176 -4.864 30.657 {c4* c 13}42.875 -3.866 30.117 {c1* c 13}43.504 -2.435 28.483 {c4* c 13}P 42.875 -3.866 30.117 {p a 14}45.320 -2.380 32.826 {c4* a 14}48.555 -1.472 30.675 {c1* a 14}48.908 0.151 29.142 {c4* a 14}P 48.555 -1.472 30.675 {p g 15}50.299 -0.095 33.766 {c4* g 15}52.179 2.963 32.252 {c1* g 15}50.739 4.417 31.162 {c4* g 15}P 52.179 2.963 32.252 {p h2u 16}52.658 5.174 35.325 {c4* h2u 16}55.699 7.273 35.679 {c1* h2u 16}54.660 8.078 37.604 {c4* h2u 16}P 55.699 7.273 35.679 {p h2u 17}58.783 7.380 36.302 {c4* h2u 17}59.075 10.841 37.981 {c1* h2u 17}60.124 12.192 36.389 {c4* h2u 17}P 59.075 10.841 37.981 {p g 18}56.153 12.293 38.707 {c4* g 18}53.964 14.366 36.416 {c1* g 18}54.414 16.537 37.011 {c4* g 18}P 53.964 14.366 36.416 {p g 19}55.690 14.740 33.288 {c4* g 19}54.276 17.280 30.652 {c1* g 19}55.995 18.853 30.642 {c4* g 19}P 54.276 17.280 30.652 {p g 20}53.238 17.243 27.600 {c4* g 20}54.456 15.707 24.338 {c1* g 20}54.777 13.434 24.350 {c4* g 20}P 54.456 15.707 24.338 {p a 21}50.876 16.180 23.223 {c4* a 21}49.738 12.673 24.233 {c1* a 21}47.724 11.590 24.428 {c4* a 21}P 49.738 12.673 24.233 {p g 22}49.849 10.558 20.991 {c4* g 22}50.148 6.938 21.962 {c1* g 22}49.013 5.908 23.666 {c4* g 22}P 50.148 6.938 21.962 {p a 23}49.603 4.196 19.130 {c4* a 23}50.293 0.612 20.711 {c1* a 23}48.760 -0.243 22.222 {c4* a 23}P 50.293 0.612 20.711 {p g 24}49.368 -1.348 17.492 {c4* g 24}48.107 -4.664 18.973 {c1* g 24}46.220 -4.370 20.237 {c4* g 24}P 48.107 -4.664 18.973 {p c 25}46.480 -5.780 15.681 {c4* c 25}42.891 -6.952 16.492 {c1* c 25}41.539 -5.551 17.667 {c4* c 25}P 42.891 -6.952 16.492 {p m2g 26}40.942 -6.906 13.106 {c4* m2g 26}37.776 -4.931 14.147 {c1* m2g 26}38.144 -2.767 14.736 {c4* m2g 26}P 37.776 -4.931 14.147 {p c 27}36.262 -4.476 10.703 {c4* c 27}34.953 -0.848 10.506 {c1* c 27}36.255 0.957 11.110 {c4* c 27}P 34.953 -0.848 10.506 {p c 28}35.253 -0.591 6.671 {c4* c 28}36.418 2.966 5.573 {c1* c 28}38.602 3.460 6.120 {c4* c 28}P 36.418 2.966 5.573 {p a 29}37.039 1.595 1.972 {c4* a 29}40.021 3.752 0.692 {c1* a 29}41.828 3.766 2.146 {c4* a 29}P 40.021 3.752 0.692 {p g 30}42.046 1.952 -2.141 {c4* g 30}45.750 3.297 -1.712 {c1* g 30}46.846 2.165 0.014 {c4* g 30}P 45.750 3.297 -1.712 {p a 31}47.250 1.565 -4.785 {c4* a 31}50.081 -0.545 -3.169 {c1* a 31}49.617 -2.037 -1.532 {c4* a 31}P 50.081 -0.545 -3.169 {p omc 32}50.880 -2.845 -6.159 {c4* omc 32}50.895 -6.282 -4.422 {o4* omc 32}49.902 -5.757 -3.553 {c1* omc 32}48.963 -6.794 -3.293 {c2* omc 32}49.186 -7.826 -4.401 {c3* omc 32}P 50.061 -7.075 -5.408 {c2* omc 32}49.186 -7.826 -4.401 {o2* omc 32}50.015 -8.834 -3.845 {c4* omc 32}P 50.895 -6.282 -4.422 {c3* omc 32}50.061 -7.075 -5.408 {p u 33}50.521 -8.509 -7.546 {c4* u 33}48.112 -11.327 -6.476 {c1* u 33}46.038 -10.693 -5.738 {c4* u 33}P 48.112 -11.327 -6.476 {p omg 34}47.219 -11.900 -10.223 {c4* omg 34}43.712 -11.427 -11.663 {o4* omg 34}43.790 -12.823 -11.892 {c1* omg 34}42.572 -13.404 -11.450 {c2* omg 34}41.745 -12.317 -10.759 {c3* omg 34}P 42.758 -11.230 -10.493 {c2* omg 34}41.745 -12.317 -10.759 {o2* omg 34}40.723 -11.837 -11.621 {c4* omg 34}P 43.712 -11.427 -11.663 {c3* omg 34}42.758 -11.230 -10.493 {p a 35}42.263 -8.835 -9.558 {c4* a 35}39.250 -10.417 -7.768 {c1* a 35}39.525 -12.591 -7.006 {c4* a 35}P 39.250 -10.417 -7.768 {p a 36}39.332 -8.094 -4.798 {c4* a 36}37.621 -10.237 -2.237 {c1* a 36}38.585 -12.352 -2.430 {c4* a 36}P 37.621 -10.237 -2.237 {p yg 37}38.123 -9.451 1.432 {c4* yg 37}40.017 -12.138 3.311 {c1* yg 37}41.462 -13.888 2.757 {c4* yg 37}P 40.017 -12.138 3.311 {p a 38}41.099 -10.250 6.116 {c4* a 38}43.910 -12.439 7.584 {c1* a 38}45.401 -13.144 5.959 {c4* a 38}P 43.910 -12.439 7.584 {p psu 39}46.305 -10.277 9.860 {c4* psu 39}49.886 -11.108 8.477 {c1* psu 39}50.140 -10.189 6.355 {c4* psu 39}P 49.886 -11.108 8.477 {p 5mc 40}51.342 -8.221 10.528 {c4* 5mc 40}53.689 -6.027 8.197 {c1* 5mc 40}52.849 -5.360 6.145 {c4* 5mc 40}P 53.689 -6.027 8.197 {p u 41}53.809 -2.389 9.850 {c4* u 41}53.593 0.039 6.736 {c1* u 41}51.583 0.174 5.643 {c4* u 41}P 53.593 0.039 6.736 {p g 42}53.365 3.056 9.075 {c4* g 42}51.077 5.396 7.023 {c1* g 42}48.974 4.686 6.480 {c4* g 42}P 51.077 5.396 7.023 {p g 43}50.051 7.500 10.169 {c4* g 43}46.999 9.300 8.688 {c1* g 43}45.243 7.783 8.502 {c4* g 43}P 46.999 9.300 8.688 {p a 44}45.632 11.343 11.777 {c4* a 44}41.830 11.298 10.891 {c1* a 44}41.075 9.123 11.185 {c4* a 44}P 41.830 11.298 10.891 {p g 45}40.314 12.923 14.024 {c4* g 45}38.251 10.046 15.680 {c1* g 45}39.402 8.140 16.290 {c4* g 45}P 38.251 10.046 15.680 {p 7mg 46}37.547 12.150 18.559 {c4* 7mg 46}37.584 10.772 22.175 {c1* 7mg 46}39.605 11.349 23.112 {c4* 7mg 46}P 37.584 10.772 22.175 {p u 47}35.389 12.461 24.245 {c4* u 47}36.723 14.876 26.759 {c1* u 47}35.396 16.473 27.821 {c4* u 47}P 36.723 14.876 26.759 {p c 48}39.512 15.072 29.497 {c4* c 48}39.619 11.249 30.376 {c1* c 48}41.869 10.902 30.554 {c4* c 48}P 39.619 11.249 30.376 {p 5mc 49}39.469 9.595 33.844 {c4* 5mc 49}35.678 10.011 33.189 {c1* 5mc 49}34.393 9.724 35.094 {c4* 5mc 49}P 35.678 10.011 33.189 {p u 50}36.094 13.806 33.091 {c4* u 50}32.818 15.350 34.763 {c1* u 50}32.775 15.127 37.077 {c4* u 50}P 32.818 15.350 34.763 {p g 51}34.176 19.001 34.678 {c4* g 51}32.897 20.769 37.954 {c1* g 51}33.733 19.824 39.892 {c4* g 51}P 32.897 20.769 37.954 {p u 52}35.343 23.812 37.825 {c4* u 52}35.971 24.542 41.563 {c1* u 52}37.050 22.820 42.642 {c4* u 52}P 35.971 24.542 41.563 {p g 53}39.095 26.932 41.612 {c4* g 53}41.311 25.616 44.546 {c1* g 53}41.994 23.437 44.448 {c4* g 53}P 41.311 25.616 44.546 {p 5mu 54}44.776 27.254 44.271 {c4* 5mu 54}47.481 24.755 45.624 {c1* 5mu 54}48.031 22.920 44.291 {c4* 5mu 54}P 47.481 24.755 45.624 {p psu 55}50.137 27.236 44.414 {c4* psu 55}52.335 24.933 42.218 {c1* psu 55}51.278 24.026 40.413 {c4* psu 55}P 52.335 24.933 42.218 {p c 56}53.879 28.091 40.838 {c4* c 56}53.985 29.094 37.113 {c1* c 56}55.223 27.625 35.832 {c4* c 56}P 53.985 29.094 37.113 {p g 57}50.439 27.548 36.613 {c4* g 57}50.769 24.776 33.885 {c1* g 57}52.672 23.486 34.059 {c4* g 57}P 50.769 24.776 33.885 {p 1ma 58}47.841 22.745 33.940 {c4* 1ma 58}48.275 18.905 34.015 {c1* 1ma 58}47.713 18.070 36.086 {c4* 1ma 58}P 48.275 18.905 34.015 {p u 59}46.385 16.863 32.340 {c4* u 59}44.403 13.727 33.555 {c1* u 59}45.559 11.757 33.164 {c4* u 59}P 44.403 13.727 33.555 {p c 60}44.981 14.487 37.100 {c4* c 60}47.150 11.531 38.542 {c1* c 60}49.194 11.869 37.504 {c4* c 60}P 47.150 11.531 38.542 {p c 61}48.323 10.608 41.680 {c4* c 61}49.659 13.381 44.198 {c1* c 61}49.151 15.625 43.871 {c4* c 61}P 49.659 13.381 44.198 {p a 62}46.937 12.287 46.658 {c4* a 62}45.927 15.507 48.615 {c1* a 62}44.929 17.151 47.362 {c4* a 62}P 45.927 15.507 48.615 {p c 63}42.865 13.828 50.218 {c4* c 63}40.245 16.666 50.566 {c1* c 63}39.565 17.601 48.590 {c4* c 63}P 40.245 16.666 50.566 {p a 64}37.121 14.548 51.290 {c4* a 64}34.131 16.466 49.654 {c1* a 64}34.190 16.704 47.347 {c4* a 64}P 34.131 16.466 49.654 {p g 65}31.450 13.612 49.661 {c4* g 65}29.616 14.270 46.287 {c1* g 65}30.763 14.045 44.324 {c4* g 65}P 29.616 14.270 46.287 {p a 66}27.820 10.788 45.920 {c4* a 66}26.989 10.472 42.174 {c1* a 66}28.962 10.301 40.982 {c4* a 66}P 26.989 10.472 42.174 {p a 67}25.780 6.899 42.000 {c4* a 67}26.762 5.597 38.556 {c1* a 67}29.044 5.256 38.666 {c4* a 67}P 26.762 5.597 38.556 {p u 68}25.802 1.843 39.236 {c4* u 68}28.484 -0.269 37.566 {c1* u 68}30.560 0.009 38.486 {c4* u 68}P 28.484 -0.269 37.566 {p u 69}27.633 -3.737 39.128 {c4* u 69}31.119 -5.299 39.704 {c1* u 69}32.261 -4.156 41.371 {c4* u 69}P 31.119 -5.299 39.704 {p c 70}29.732 -8.195 41.958 {c4* c 70}32.758 -8.842 44.405 {c1* c 70}33.498 -7.101 45.740 {c4* c 70}P 32.758 -8.842 44.405 {p g 71}31.226 -10.948 47.370 {c4* g 71}33.302 -10.171 50.560 {c1* g 71}33.462 -7.964 51.136 {c4* g 71}P 33.302 -10.171 50.560 {p c 72}30.858 -11.284 53.336 {c4* c 72}31.078 -8.645 56.121 {c1* c 72}30.212 -6.659 55.394 {c4* c 72}P 31.078 -8.645 56.121 {p a 73}27.846 -9.558 58.168 {c4* a 73}26.663 -5.966 59.336 {c1* a 73}25.933 -4.535 57.671 {c4* a 73}P 26.663 -5.966 59.336 {p c 74}23.083 -6.943 60.527 {c4* c 74}20.580 -4.418 59.156 {c1* c 74}20.068 -4.463 56.932 {c4* c 74}P 20.580 -4.418 59.156 {p c 75}18.015 -6.964 60.608 {c4* c 75}14.855 -6.313 58.510 {c1* c 75}15.473 -7.084 56.392 {c4* c 75}P 14.855 -6.313 58.510 {p a 76}12.264 -9.231 58.970 {c4* a 76}8.364 -9.348 58.370 {c1* a 76}7.696 -9.164 60.618 @group {tRNA side} dominant animate @subgroup {CCA stm} @vectorlist {bp Hb} color= gray master= {base-pr Hb} {o2 c 72}P U 28.789 -3.782 55.568 {n2 g 1}U 28.304 -2.680 56.206 {n1 g 1}P U 27.311 -2.751 54.159 {n3 c 72}U 27.702 -4.091 53.637 {n4 c 72}P U 27.059 -4.234 51.481 {o6 g 1}U 26.280 -2.732 52.194 {o2 c 2}P U 32.167 -2.083 54.624 {n2 g 71}U 32.921 -3.189 54.421 {n1 g 71}P U 31.222 -2.940 52.900 {n3 c 2}U 30.576 -1.753 53.059 {n4 c 2}P U 29.094 -1.276 51.368 {o6 g 71}U 29.746 -2.577 51.248 {n2 g 3}P U 34.680 -4.651 49.589 {o2 c 70}U 34.301 -5.114 48.312 {n1 g 3}P U 33.050 -3.088 49.199 {n3 c 70}U 32.503 -3.818 48.138 {o6 g 3}P U 31.364 -1.600 48.979 {n4 c 70}U 30.686 -2.438 47.872 {n1 g 4}P U 34.479 -2.707 45.547 {o2 u 69}U 33.785 -3.010 44.168 {o6 g 4}P U 33.219 -0.973 46.079 {n3 u 69}U 32.204 -1.579 44.681 {n6 a 5}P U 33.699 1.372 44.331 {o4 u 68}U 32.337 1.838 43.634 {n1 a 5}P U 34.151 0.001 42.578 {n3 u 68}U 32.897 0.583 41.882 {o4 u 6}P U 35.685 3.865 43.157 {n6 a 67}U 33.939 4.364 42.986 {n3 u 6}P U 35.341 2.996 41.139 {n1 a 67}U 34.183 3.563 40.895 {o4 u 7}P U 35.768 6.470 41.230 {n6 a 66}U 34.679 7.424 41.997 {n1 a 66}P U 33.872 7.345 39.850 {n3 u 7}U 34.976 6.385 39.146 @vectorlist {CCA A} color= pink master= {std bases} {c1* a 5}P 39.448 -1.737 44.231 {n9 a 5}38.420 -0.702 44.464 {c8 a 5}38.423 0.272 45.424 {n7 a 5}37.216 0.950 45.366 {c5 a 5}36.482 0.343 44.346 {c6 a 5}35.163 0.493 43.904 {n6 a 5}34.295 1.168 44.636 {c6 a 5}P 35.163 0.493 43.904 {n1 a 5}34.718 -0.263 42.892 {c2 a 5}35.498 -1.178 42.310 {n3 a 5}36.742 -1.384 42.721 {c4 a 5}37.254 -0.626 43.760 {c5 a 5}36.482 0.343 44.346 {n9 a 5}P 38.420 -0.702 44.464 {c4 a 5}37.254 -0.626 43.760 {c5 a 5}36.482 0.343 44.346 {c4 a 5}37.254 -0.626 43.760 {c5 a 5}36.482 0.343 44.346 {c4 a 5}P 37.254 -0.626 43.760 {n3 a 5}36.742 -1.384 42.721 {c1* a 66}P 28.962 10.301 40.982 {n9 a 66}30.182 9.786 41.577 {c8 a 66}30.489 9.857 42.881 {n7 a 66}31.676 9.235 43.083 {c5 a 66}32.090 8.751 41.850 {c6 a 66}33.257 8.111 41.436 {n6 a 66}34.214 7.832 42.324 {c6 a 66}P 33.257 8.111 41.436 {n1 a 66}33.396 7.759 40.154 {c2 a 66}32.437 8.022 39.253 {n3 a 66}31.329 8.672 39.592 {c4 a 66}31.153 9.071 40.911 {c5 a 66}32.090 8.751 41.850 {n9 a 66}P 30.182 9.786 41.577 {c4 a 66}31.153 9.071 40.911 {c5 a 66}32.090 8.751 41.850 {c4 a 66}31.153 9.071 40.911 {c5 a 66}32.090 8.751 41.850 {c4 a 66}P 31.153 9.071 40.911 {n3 a 66}31.329 8.672 39.592 {c1* a 67}P 29.044 5.256 38.666 {n9 a 67}29.832 5.239 39.937 {c8 a 67}29.533 5.866 41.083 {n7 a 67}30.574 5.672 41.981 {c5 a 67}31.545 4.937 41.320 {c6 a 67}32.853 4.544 41.653 {n6 a 67}33.269 4.555 42.921 {c6 a 67}P 32.853 4.544 41.653 {n1 a 67}33.565 3.865 40.765 {c2 a 67}33.087 3.580 39.552 {n3 a 67}31.880 3.961 39.184 {c4 a 67}31.073 4.657 40.071 {c5 a 67}31.545 4.937 41.320 {n9 a 67}P 29.832 5.239 39.937 {c4 a 67}31.073 4.657 40.071 {c5 a 67}31.545 4.937 41.320 {c4 a 67}31.073 4.657 40.071 {c5 a 67}31.545 4.937 41.320 {c4 a 67}P 31.073 4.657 40.071 {n3 a 67}31.880 3.961 39.184 {c1* a 73}P 25.933 -4.535 57.671 {n9 a 73}25.497 -5.077 56.371 {c8 a 73}25.805 -6.306 55.870 {n7 a 73}25.276 -6.407 54.608 {c5 a 73}24.599 -5.215 54.355 {c6 a 73}24.019 -4.680 53.200 {n6 a 73}23.817 -5.455 52.138 {c6 a 73}P 24.019 -4.680 53.200 {n1 a 73}23.446 -3.480 53.253 {c2 a 73}23.438 -2.752 54.383 {n3 a 73}24.045 -3.187 55.482 {c4 a 73}24.667 -4.428 55.477 {c5 a 73}24.599 -5.215 54.355 {n9 a 73}P 25.497 -5.077 56.371 {c4 a 73}24.667 -4.428 55.477 {c5 a 73}24.599 -5.215 54.355 {c4 a 73}24.667 -4.428 55.477 {c5 a 73}24.599 -5.215 54.355 {c4 a 73}P 24.667 -4.428 55.477 {n3 a 73}24.045 -3.187 55.482 {c1* a 76}P 7.696 -9.164 60.618 {n9 a 76}8.430 -9.185 61.902 {c8 a 76}9.781 -9.097 62.038 {n7 a 76}10.101 -9.181 63.361 {c5 a 76}8.905 -9.328 64.047 {c6 a 76}8.626 -9.568 65.392 {n6 a 76}9.540 -9.257 66.289 {c6 a 76}P 8.626 -9.568 65.392 {n1 a 76}7.358 -9.696 65.778 {c2 a 76}6.345 -9.605 64.898 {n3 a 76}6.568 -9.405 63.599 {c4 a 76}7.870 -9.283 63.150 {c5 a 76}8.905 -9.328 64.047 {n9 a 76}P 8.430 -9.185 61.902 {c4 a 76}7.870 -9.283 63.150 {c5 a 76}8.905 -9.328 64.047 {c4 a 76}7.870 -9.283 63.150 {c5 a 76}8.905 -9.328 64.047 {c4 a 76}P 7.870 -9.283 63.150 {n3 a 76}6.568 -9.405 63.599 @vectorlist {CCA U} color= sky master= {std bases} {c1* u 6}P 38.007 0.277 39.351 {n1 u 6}37.600 1.310 40.340 {c2 u 6}36.338 1.770 40.360 {o2 u 6}35.478 1.251 39.625 {c2 u 6}P 36.338 1.770 40.360 {n3 u 6}35.959 2.694 41.269 {c4 u 6}36.807 3.194 42.166 {o4 u 6}36.355 3.674 43.222 {c4 u 6}P 36.807 3.194 42.166 {c5 u 6}38.121 2.762 42.132 {c6 u 6}38.495 1.800 41.193 {c5 u 6}38.121 2.762 42.132 {n1 u 6}P 37.600 1.310 40.340 {c6 u 6}38.495 1.800 41.193 {c5 u 6}38.121 2.762 42.132 {c1* u 7}P 36.824 4.578 35.717 {n1 u 7}36.714 5.012 37.134 {c2 u 7}35.568 5.559 37.594 {o2 u 7}34.571 5.614 36.871 {c2 u 7}P 35.568 5.559 37.594 {n3 u 7}35.452 5.971 38.843 {c4 u 7}36.441 5.830 39.705 {o4 u 7}36.233 6.062 40.903 {c4 u 7}P 36.441 5.830 39.705 {c5 u 7}37.621 5.192 39.299 {c6 u 7}37.716 4.754 37.969 {c5 u 7}37.621 5.192 39.299 {n1 u 7}P 36.714 5.012 37.134 {c6 u 7}37.716 4.754 37.969 {c5 u 7}37.621 5.192 39.299 {c1* u 68}P 30.560 0.009 38.486 {n1 u 68}30.839 0.540 39.820 {c2 u 68}32.053 0.363 40.365 {o2 u 68}32.801 -0.513 39.904 {c2 u 68}P 32.053 0.363 40.365 {n3 u 68}32.330 0.847 41.568 {c4 u 68}31.416 1.481 42.272 {o4 u 68}31.741 2.042 43.329 {c4 u 68}P 31.416 1.481 42.272 {c5 u 68}30.134 1.655 41.752 {c6 u 68}29.880 1.166 40.479 {c5 u 68}30.134 1.655 41.752 {n1 u 68}P 30.839 0.540 39.820 {c6 u 68}29.880 1.166 40.479 {c5 u 68}30.134 1.655 41.752 {c1* u 69}P 32.261 -4.156 41.371 {n1 u 69}31.662 -3.155 42.258 {c2 u 69}32.332 -2.730 43.337 {o2 u 69}33.477 -3.145 43.554 {c2 u 69}P 32.332 -2.730 43.337 {n3 u 69}31.815 -1.810 44.147 {c4 u 69}30.636 -1.274 43.904 {o4 u 69}30.243 -0.320 44.585 {c4 u 69}P 30.636 -1.274 43.904 {c5 u 69}29.931 -1.665 42.786 {c6 u 69}30.491 -2.625 41.954 {c5 u 69}29.931 -1.665 42.786 {n1 u 69}P 31.662 -3.155 42.258 {c6 u 69}30.491 -2.625 41.954 {c5 u 69}29.931 -1.665 42.786 @vectorlist {G CCA} color= sea master= {std bases} {c1* g 1}P 25.833 2.612 55.903 {n9 g 1}25.681 1.623 54.832 {c8 g 1}24.865 1.712 53.755 {n7 g 1}25.012 0.580 52.989 {c5 g 1}25.874 -0.248 53.697 {c6 g 1}26.336 -1.541 53.483 {o6 g 1}25.983 -2.159 52.466 {c6 g 1}P 26.336 -1.541 53.483 {n1 g 1}27.127 -2.122 54.405 {c2 g 1}27.481 -1.468 55.532 {n2 g 1}28.055 -2.114 56.534 {c2 g 1}P 27.481 -1.468 55.532 {n3 g 1}27.078 -0.243 55.747 {c4 g 1}26.260 0.388 54.839 {c5 g 1}25.874 -0.248 53.697 {n9 g 1}P 25.681 1.623 54.832 {c4 g 1}26.260 0.388 54.839 {c5 g 1}25.874 -0.248 53.697 {c4 g 1}26.260 0.388 54.839 {c5 g 1}25.874 -0.248 53.697 {c4 g 1}P 26.260 0.388 54.839 {n3 g 1}27.078 -0.243 55.747 {c1* g 3}P 35.772 -0.434 53.651 {n9 g 3}34.630 -0.302 52.717 {c8 g 3}33.780 0.768 52.590 {n7 g 3}32.895 0.502 51.557 {c5 g 3}33.242 -0.757 51.063 {c6 g 3}32.769 -1.512 49.984 {o6 g 3}31.672 -1.220 49.480 {c6 g 3}P 32.769 -1.512 49.984 {n1 g 3}33.324 -2.722 49.729 {c2 g 3}34.329 -3.222 50.500 {n2 g 3}34.868 -4.421 50.223 {c2 g 3}P 34.329 -3.222 50.500 {n3 g 3}34.799 -2.523 51.531 {c4 g 3}34.267 -1.271 51.817 {c5 g 3}33.242 -0.757 51.063 {n9 g 3}P 34.630 -0.302 52.717 {c4 g 3}34.267 -1.271 51.817 {c5 g 3}33.242 -0.757 51.063 {c4 g 3}34.267 -1.271 51.817 {c5 g 3}33.242 -0.757 51.063 {c4 g 3}P 34.267 -1.271 51.817 {n3 g 3}34.799 -2.523 51.531 {c1* g 4}P 38.604 -1.895 49.532 {n9 g 4}37.351 -1.323 49.033 {c8 g 4}36.749 -0.186 49.459 {n7 g 4}35.590 -0.012 48.720 {c5 g 4}35.532 -1.066 47.811 {c6 g 4}34.556 -1.492 46.905 {o6 g 4}33.608 -0.742 46.613 {c6 g 4}P 34.556 -1.492 46.905 {n1 g 4}34.787 -2.572 46.161 {c2 g 4}35.922 -3.277 46.268 {n2 g 4}36.180 -4.264 45.397 {c2 g 4}P 35.922 -3.277 46.268 {n3 g 4}36.841 -2.942 47.163 {c4 g 4}36.644 -1.838 47.975 {c5 g 4}35.532 -1.066 47.811 {n9 g 4}P 37.351 -1.323 49.033 {c4 g 4}36.644 -1.838 47.975 {c5 g 4}35.532 -1.066 47.811 {c4 g 4}36.644 -1.838 47.975 {c5 g 4}35.532 -1.066 47.811 {c4 g 4}P 36.644 -1.838 47.975 {n3 g 4}36.841 -2.942 47.163 {c1* g 71}P 33.462 -7.964 51.136 {n9 g 71}32.509 -6.906 50.816 {c8 g 71}31.621 -6.879 49.783 {n7 g 71}30.905 -5.719 49.879 {c5 g 71}31.344 -5.077 51.031 {c6 g 71}30.957 -3.906 51.671 {o6 g 71}30.058 -3.201 51.191 {c6 g 71}P 30.957 -3.906 51.671 {n1 g 71}31.555 -3.550 52.818 {c2 g 71}32.519 -4.304 53.384 {n2 g 71}33.311 -3.761 54.317 {c2 g 71}P 32.519 -4.304 53.384 {n3 g 71}32.898 -5.432 52.804 {c4 g 71}32.310 -5.825 51.615 {c5 g 71}31.344 -5.077 51.031 {n9 g 71}P 32.509 -6.906 50.816 {c4 g 71}32.310 -5.825 51.615 {c5 g 71}31.344 -5.077 51.031 {c4 g 71}32.310 -5.825 51.615 {c5 g 71}31.344 -5.077 51.031 {c4 g 71}P 32.310 -5.825 51.615 {n3 g 71}32.898 -5.432 52.804 @vectorlist {CCA C} color= yellow master= {std bases} {c1* c 2}P 31.162 0.636 56.248 {n1 c 2}30.570 0.343 54.911 {c2 c 2}30.799 -0.845 54.338 {o2 c 2}31.777 -1.511 54.728 {c2 c 2}P 30.799 -0.845 54.338 {n3 c 2}30.243 -1.143 53.141 {c4 c 2}29.496 -0.265 52.481 {n4 c 2}28.782 -0.652 51.425 {c4 c 2}P 29.496 -0.265 52.481 {c5 c 2}29.284 0.988 53.032 {c6 c 2}29.844 1.264 54.273 {c5 c 2}29.284 0.988 53.032 {n1 c 2}P 30.570 0.343 54.911 {c6 c 2}29.844 1.264 54.273 {c5 c 2}29.284 0.988 53.032 {c1* c 70}P 33.498 -7.101 45.740 {n1 c 70}32.621 -5.974 46.158 {c2 c 70}32.981 -5.216 47.207 {o2 c 70}34.113 -5.344 47.678 {c2 c 70}P 32.981 -5.216 47.207 {n3 c 70}32.229 -4.184 47.608 {c4 c 70}31.102 -3.867 46.973 {n4 c 70}30.378 -2.818 47.371 {c4 c 70}P 31.102 -3.867 46.973 {c5 c 70}30.706 -4.623 45.871 {c6 c 70}31.510 -5.688 45.475 {c5 c 70}30.706 -4.623 45.871 {n1 c 70}P 32.621 -5.974 46.158 {c6 c 70}31.510 -5.688 45.475 {c5 c 70}30.706 -4.623 45.871 {c1* c 72}P 30.212 -6.659 55.394 {n1 c 72}29.306 -6.309 54.298 {c2 c 72}28.696 -5.141 54.356 {o2 c 72}29.038 -4.348 55.240 {c2 c 72}P 28.696 -5.141 54.356 {n3 c 72}27.886 -4.720 53.391 {c4 c 72}27.662 -5.450 52.327 {n4 c 72}27.356 -4.807 51.209 {c4 c 72}P 27.662 -5.450 52.327 {c5 c 72}28.288 -6.700 52.236 {c6 c 72}29.141 -7.108 53.263 {c5 c 72}28.288 -6.700 52.236 {n1 c 72}P 29.306 -6.309 54.298 {c6 c 72}29.141 -7.108 53.263 {c5 c 72}28.288 -6.700 52.236 {c1* c 74}P 20.068 -4.463 56.932 {n1 c 74}20.534 -5.449 55.936 {c2 c 74}19.964 -5.491 54.718 {o2 c 74}19.242 -4.543 54.357 {c2 c 74}P 19.964 -5.491 54.718 {n3 c 74}20.374 -6.383 53.800 {c4 c 74}21.361 -7.228 54.060 {n4 c 74}21.939 -7.882 53.058 {c4 c 74}P 21.361 -7.228 54.060 {c5 c 74}21.981 -7.192 55.308 {c6 c 74}21.544 -6.262 56.243 {c5 c 74}21.981 -7.192 55.308 {n1 c 74}P 20.534 -5.449 55.936 {c6 c 74}21.544 -6.262 56.243 {c5 c 74}21.981 -7.192 55.308 {c1* c 75}P 15.473 -7.084 56.392 {n1 c 75}16.612 -8.039 56.213 {c2 c 75}16.561 -9.067 55.322 {o2 c 75}15.454 -9.511 54.967 {c2 c 75}P 16.561 -9.067 55.322 {n3 c 75}17.668 -9.832 55.092 {c4 c 75}18.822 -9.594 55.738 {n4 c 75}19.874 -10.403 55.608 {c4 c 75}P 18.822 -9.594 55.738 {c5 c 75}18.865 -8.570 56.662 {c6 c 75}17.728 -7.797 56.867 {c5 c 75}18.865 -8.570 56.662 {n1 c 75}P 16.612 -8.039 56.213 {c6 c 75}17.728 -7.797 56.867 {c5 c 75}18.865 -8.570 56.662 @labellist {CCA lbl} color= cyan master= {labels} { 74 C}20.580 -4.418 59.156 { 75 C}14.855 -6.313 58.510 { 76 A}8.364 -9.348 58.370 { 1 G}25.808 4.801 55.152 @subgroup {dhU stm} @vectorlist {hU A} color= pink master= {std bases} {c1* a 9}P 39.461 6.015 21.854 {n9 a 9}40.814 5.457 21.830 {c8 a 9}41.194 4.275 22.388 {n7 a 9}42.541 4.093 22.149 {c5 a 9}42.958 5.198 21.414 {c6 a 9}44.193 5.553 20.877 {n6 a 9}45.271 4.852 21.208 {c6 a 9}P 44.193 5.553 20.877 {n1 a 9}44.309 6.688 20.177 {c2 a 9}43.255 7.491 19.989 {n3 a 9}42.066 7.197 20.494 {c4 a 9}41.898 6.034 21.217 {c5 a 9}42.958 5.198 21.414 {n9 a 9}P 40.814 5.457 21.830 {c4 a 9}41.898 6.034 21.217 {c5 a 9}42.958 5.198 21.414 {c4 a 9}41.898 6.034 21.217 {c5 a 9}42.958 5.198 21.414 {c4 a 9}P 41.898 6.034 21.217 {n3 a 9}42.066 7.197 20.494 {c1* a 14}P 48.908 0.151 29.142 {n9 a 14}48.240 1.414 28.953 {c8 a 14}46.966 1.665 29.277 {n7 a 14}46.679 2.954 28.906 {c5 a 14}47.850 3.493 28.357 {c6 a 14}48.151 4.740 27.798 {n6 a 14}47.226 5.695 27.752 {c6 a 14}P 48.151 4.740 27.798 {n1 a 14}49.360 4.965 27.312 {c2 a 14}50.304 4.020 27.353 {n3 a 14}50.063 2.824 27.891 {c4 a 14}48.817 2.543 28.409 {c5 a 14}47.850 3.493 28.357 {n9 a 14}P 48.240 1.414 28.953 {c4 a 14}48.817 2.543 28.409 {c5 a 14}47.850 3.493 28.357 {c4 a 14}48.817 2.543 28.409 {c5 a 14}47.850 3.493 28.357 {c4 a 14}P 48.817 2.543 28.409 {n3 a 14}50.063 2.824 27.891 {c1* a 21}P 47.724 11.590 24.428 {n9 a 21}46.412 11.764 25.069 {c8 a 21}45.578 12.816 24.875 {n7 a 21}44.369 12.526 25.464 {c5 a 21}44.493 11.266 26.036 {c6 a 21}43.582 10.433 26.693 {n6 a 21}42.274 10.631 26.525 {c6 a 21}P 43.582 10.433 26.693 {n1 a 21}43.986 9.258 27.149 {c2 a 21}45.236 8.839 26.954 {n3 a 21}46.132 9.582 26.310 {c4 a 21}45.775 10.830 25.850 {c5 a 21}44.493 11.266 26.036 {n9 a 21}P 46.412 11.764 25.069 {c4 a 21}45.775 10.830 25.850 {c5 a 21}44.493 11.266 26.036 {c4 a 21}45.775 10.830 25.850 {c5 a 21}44.493 11.266 26.036 {c4 a 21}P 45.775 10.830 25.850 {n3 a 21}46.132 9.582 26.310 {c1* a 23}P 48.760 -0.243 22.222 {n9 a 23}47.450 0.399 22.274 {c8 a 23}47.196 1.658 21.873 {n7 a 23}45.903 1.991 22.198 {c5 a 23}45.370 0.878 22.839 {c6 a 23}44.087 0.603 23.320 {n6 a 23}43.073 1.419 23.024 {c6 a 23}P 44.087 0.603 23.320 {n1 a 23}43.858 -0.565 23.894 {c2 a 23}44.825 -1.494 24.008 {n3 a 23}46.033 -1.305 23.530 {c4 a 23}46.327 -0.113 22.893 {c5 a 23}45.370 0.878 22.839 {n9 a 23}P 47.450 0.399 22.274 {c4 a 23}46.327 -0.113 22.893 {c5 a 23}45.370 0.878 22.839 {c4 a 23}46.327 -0.113 22.893 {c5 a 23}45.370 0.878 22.839 {c4 a 23}P 46.327 -0.113 22.893 {n3 a 23}46.033 -1.305 23.530 @vectorlist {dhU U} color= sky master= {std bases} {c1* u 8}P 42.014 6.669 29.700 {n1 u 8}42.516 5.302 29.862 {c2 u 8}43.639 4.876 29.234 {o2 u 8}44.374 5.675 28.646 {c2 u 8}P 43.639 4.876 29.234 {n3 u 8}44.087 3.647 29.437 {c4 u 8}43.467 2.812 30.258 {o4 u 8}44.139 1.949 30.820 {c4 u 8}P 43.467 2.812 30.258 {c5 u 8}42.301 3.227 30.892 {c6 u 8}41.850 4.505 30.668 {c5 u 8}42.301 3.227 30.892 {n1 u 8}P 42.516 5.302 29.862 {c6 u 8}41.850 4.505 30.668 {c5 u 8}42.301 3.227 30.892 {c1* u 12}P 39.627 -4.594 25.946 {n1 u 12}39.843 -3.171 25.604 {c2 u 12}41.002 -2.817 25.048 {o2 u 12}41.962 -3.600 25.151 {c2 u 12}P 41.002 -2.817 25.048 {n3 u 12}41.235 -1.547 24.683 {c4 u 12}40.335 -0.603 24.898 {o4 u 12}40.543 0.568 24.525 {c4 u 12}P 40.335 -0.603 24.898 {c5 u 12}39.141 -0.939 25.528 {c6 u 12}38.923 -2.263 25.882 {c5 u 12}39.141 -0.939 25.528 {n1 u 12}P 39.843 -3.171 25.604 {c6 u 12}38.923 -2.263 25.882 {c5 u 12}39.141 -0.939 25.528 @vectorlist {dhU mU} color= blue master= {mod bases} {c1* h2u 16}P 54.660 8.078 37.604 {n1 h2u 16}53.222 7.997 37.854 {c2 h2u 16}52.571 9.114 38.058 {o2 h2u 16}53.193 10.070 38.533 {c2 h2u 16}P 52.571 9.114 38.058 {n3 h2u 16}51.255 9.093 38.204 {c4 h2u 16}50.554 7.974 38.166 {o4 h2u 16}49.321 8.020 38.095 {c4 h2u 16}P 50.554 7.974 38.166 {c5 h2u 16}51.237 6.667 37.975 {c6 h2u 16}52.678 6.774 38.429 {c5 h2u 16}51.237 6.667 37.975 {n1 h2u 16}P 53.222 7.997 37.854 {c6 h2u 16}52.678 6.774 38.429 {c5 h2u 16}51.237 6.667 37.975 {c1* h2u 17}P 60.124 12.192 36.389 {n1 h2u 17}61.280 12.038 35.466 {c2 h2u 17}62.322 12.870 35.539 {o2 h2u 17}62.227 13.920 36.170 {c2 h2u 17}P 62.322 12.870 35.539 {n3 h2u 17}63.395 12.682 34.780 {c4 h2u 17}63.503 11.629 33.992 {o4 h2u 17}64.559 11.423 33.387 {c4 h2u 17}P 63.503 11.629 33.992 {c5 h2u 17}62.424 10.596 33.977 {c6 h2u 17}61.109 11.294 34.250 {c5 h2u 17}62.424 10.596 33.977 {n1 h2u 17}P 61.280 12.038 35.466 {c6 h2u 17}61.109 11.294 34.250 {c5 h2u 17}62.424 10.596 33.977 @vectorlist {dhU G} color= sea master= {std bases} {c1* g 15}P 50.739 4.417 31.162 {n9 g 15}49.312 4.566 31.523 {c8 g 15}48.568 3.660 32.213 {n7 g 15}47.309 4.162 32.382 {c5 g 15}47.290 5.404 31.760 {c6 g 15}46.293 6.359 31.607 {o6 g 15}45.212 6.221 32.206 {c6 g 15}P 46.293 6.359 31.607 {n1 g 15}46.546 7.474 30.904 {c2 g 15}47.752 7.700 30.350 {n2 g 15}47.843 8.608 29.402 {c2 g 15}P 47.752 7.700 30.350 {n3 g 15}48.739 6.827 30.499 {c4 g 15}48.517 5.650 31.207 {c5 g 15}47.290 5.404 31.760 {n9 g 15}P 49.312 4.566 31.523 {c4 g 15}48.517 5.650 31.207 {c5 g 15}47.290 5.404 31.760 {c4 g 15}48.517 5.650 31.207 {c5 g 15}47.290 5.404 31.760 {c4 g 15}P 48.517 5.650 31.207 {n3 g 15}48.739 6.827 30.499 {c1* g 18}P 54.414 16.537 37.011 {n9 g 18}54.221 17.314 38.228 {c8 g 18}54.921 17.231 39.395 {n7 g 18}54.414 18.198 40.267 {c5 g 18}53.419 18.878 39.558 {c6 g 18}52.635 20.003 39.830 {o6 g 18}52.927 20.748 40.770 {c6 g 18}P 52.635 20.003 39.830 {n1 g 18}51.786 20.442 38.911 {c2 g 18}51.674 19.862 37.721 {n2 g 18}50.943 20.439 36.785 {c2 g 18}P 51.674 19.862 37.721 {n3 g 18}52.408 18.816 37.407 {c4 g 18}53.303 18.310 38.324 {c5 g 18}53.419 18.878 39.558 {n9 g 18}P 54.221 17.314 38.228 {c4 g 18}53.303 18.310 38.324 {c5 g 18}53.419 18.878 39.558 {c4 g 18}53.303 18.310 38.324 {c5 g 18}53.419 18.878 39.558 {c4 g 18}P 53.303 18.310 38.324 {n3 g 18}52.408 18.816 37.407 {c1* g 19}P 55.995 18.853 30.642 {n9 g 19}57.010 19.154 31.603 {c8 g 19}57.724 18.280 32.225 {n7 g 19}58.383 18.918 33.213 {c5 g 19}57.987 20.238 33.176 {c6 g 19}58.241 21.328 33.968 {o6 g 19}58.806 21.193 35.061 {c6 g 19}P 58.241 21.328 33.968 {n1 g 19}57.689 22.437 33.693 {c2 g 19}56.856 22.561 32.709 {n2 g 19}56.308 23.725 32.463 {c2 g 19}P 56.856 22.561 32.709 {n3 g 19}56.556 21.565 31.955 {c4 g 19}57.153 20.369 32.176 {c5 g 19}57.987 20.238 33.176 {n9 g 19}P 57.010 19.154 31.603 {c4 g 19}57.153 20.369 32.176 {c5 g 19}57.987 20.238 33.176 {c4 g 19}57.153 20.369 32.176 {c5 g 19}57.987 20.238 33.176 {c4 g 19}P 57.153 20.369 32.176 {n3 g 19}56.556 21.565 31.955 {c1* g 20}P 54.777 13.434 24.350 {n9 g 20}54.370 12.657 25.536 {c8 g 20}54.586 13.022 26.814 {n7 g 20}53.997 12.106 27.630 {c5 g 20}53.426 11.150 26.812 {c6 g 20}52.742 9.971 27.099 {o6 g 20}52.774 9.546 28.254 {c6 g 20}P 52.742 9.971 27.099 {n1 g 20}52.289 9.192 26.113 {c2 g 20}52.515 9.504 24.839 {n2 g 20}52.145 8.655 23.897 {c2 g 20}P 52.515 9.504 24.839 {n3 g 20}53.216 10.611 24.513 {c4 g 20}53.693 11.455 25.518 {c5 g 20}53.426 11.150 26.812 {n9 g 20}P 54.370 12.657 25.536 {c4 g 20}53.693 11.455 25.518 {c5 g 20}53.426 11.150 26.812 {c4 g 20}53.693 11.455 25.518 {c5 g 20}53.426 11.150 26.812 {c4 g 20}P 53.693 11.455 25.518 {n3 g 20}53.216 10.611 24.513 {c1* g 22}P 49.013 5.908 23.666 {n9 g 22}47.577 5.935 23.998 {c8 g 22}46.733 6.964 23.739 {n7 g 22}45.469 6.611 24.161 {c5 g 22}45.551 5.316 24.656 {c6 g 22}44.619 4.466 25.241 {o6 g 22}43.438 4.813 25.350 {c6 g 22}P 44.619 4.466 25.241 {n1 g 22}44.967 3.240 25.587 {c2 g 22}46.219 2.809 25.422 {n2 g 22}46.580 1.647 25.959 {c2 g 22}P 46.219 2.809 25.422 {n3 g 22}47.153 3.602 24.912 {c4 g 22}46.840 4.885 24.525 {c5 g 22}45.551 5.316 24.656 {n9 g 22}P 47.577 5.935 23.998 {c4 g 22}46.840 4.885 24.525 {c5 g 22}45.551 5.316 24.656 {c4 g 22}46.840 4.885 24.525 {c5 g 22}45.551 5.316 24.656 {c4 g 22}P 46.840 4.885 24.525 {n3 g 22}47.153 3.602 24.912 {c1* g 24}P 46.220 -4.370 20.237 {n9 g 24}45.440 -3.145 20.252 {c8 g 24}45.782 -1.986 19.649 {n7 g 24}44.734 -1.109 19.782 {c5 g 24}43.741 -1.778 20.482 {c6 g 24}42.431 -1.443 20.790 {o6 g 24}42.015 -0.301 20.546 {c6 g 24}P 42.431 -1.443 20.790 {n1 g 24}41.667 -2.313 21.447 {c2 g 24}42.136 -3.517 21.825 {n2 g 24}41.266 -4.454 22.188 {c2 g 24}P 42.136 -3.517 21.825 {n3 g 24}43.387 -3.873 21.545 {c4 g 24}44.206 -3.006 20.842 {c5 g 24}43.741 -1.778 20.482 {n9 g 24}P 45.440 -3.145 20.252 {c4 g 24}44.206 -3.006 20.842 {c5 g 24}43.741 -1.778 20.482 {c4 g 24}44.206 -3.006 20.842 {c5 g 24}43.741 -1.778 20.482 {c4 g 24}P 44.206 -3.006 20.842 {n3 g 24}43.387 -3.873 21.545 @vectorlist {mG dhU} color= green master= {mod bases} {c1* 2mg 10}P 33.799 2.135 19.422 {n9 2mg 10}35.239 2.318 19.178 {c8 2mg 10}35.845 3.518 19.010 {n7 2mg 10}37.186 3.308 18.791 {c5 2mg 10}37.354 1.927 18.736 {c6 2mg 10}38.473 1.125 18.520 {o6 2mg 10}39.522 1.644 18.124 {c6 2mg 10}P 38.473 1.125 18.520 {n1 2mg 10}38.340 -0.191 18.462 {c2 2mg 10}37.154 -0.778 18.601 {n2 2mg 10}37.107 -2.099 18.763 {c2a 2mg 10}35.812 -2.765 18.885 {c2 2mg 10}P 37.154 -0.778 18.601 {n3 2mg 10}36.061 -0.051 18.830 {c4 2mg 10}36.149 1.323 18.918 {c5 2mg 10}37.354 1.927 18.736 {n9 2mg 10}P 35.239 2.318 19.178 {c4 2mg 10}36.149 1.323 18.918 {c5 2mg 10}37.354 1.927 18.736 {c4 2mg 10}36.149 1.323 18.918 {c5 2mg 10}37.354 1.927 18.736 {c4 2mg 10}P 36.149 1.323 18.918 {n3 2mg 10}36.061 -0.051 18.830 @vectorlist {dhU C} color= yellow master= {std bases} {c1* c 11}P 35.570 -2.576 22.635 {n1 c 11}36.688 -1.640 22.420 {c2 c 11}37.924 -2.093 22.139 {o2 c 11}38.153 -3.314 22.152 {c2 c 11}P 37.924 -2.093 22.139 {n3 c 11}38.944 -1.234 21.937 {c4 c 11}38.736 0.082 21.994 {n4 c 11}39.692 0.934 21.676 {c4 c 11}P 38.736 0.082 21.994 {c5 c 11}37.464 0.561 22.239 {c6 c 11}36.439 -0.347 22.433 {c5 c 11}37.464 0.561 22.239 {n1 c 11}P 36.688 -1.640 22.420 {c6 c 11}36.439 -0.347 22.433 {c5 c 11}37.464 0.561 22.239 {c1* c 13}P 43.504 -2.435 28.483 {n1 c 13}43.017 -1.099 28.151 {c2 c 13}43.798 -0.257 27.476 {o2 c 13}44.959 -0.597 27.203 {c2 c 13}P 43.798 -0.257 27.476 {n3 c 13}43.373 0.964 27.144 {c4 c 13}42.163 1.383 27.539 {n4 c 13}41.621 2.503 27.033 {c4 c 13}P 42.163 1.383 27.539 {c5 c 13}41.377 0.545 28.311 {c6 c 13}41.847 -0.715 28.614 {c5 c 13}41.377 0.545 28.311 {n1 c 13}P 43.017 -1.099 28.151 {c6 c 13}41.847 -0.715 28.614 {c5 c 13}41.377 0.545 28.311 {c1* c 25}P 41.539 -5.551 17.667 {n1 c 25}41.639 -4.124 17.725 {c2 c 25}40.638 -3.430 18.204 {o2 c 25}39.532 -3.987 18.315 {c2 c 25}P 40.638 -3.430 18.204 {n3 c 25}40.693 -2.102 18.204 {c4 c 25}41.714 -1.455 17.666 {n4 c 25}41.840 -0.145 17.831 {c4 c 25}P 41.714 -1.455 17.666 {c5 c 25}42.749 -2.175 17.113 {c6 c 25}42.675 -3.545 17.153 {c5 c 25}42.749 -2.175 17.113 {n1 c 25}P 41.639 -4.124 17.725 {c6 c 25}42.675 -3.545 17.153 {c5 c 25}42.749 -2.175 17.113 @vectorlist {bp Hb} color= gray master= {base-pr Hb} {n4 c 25}P U 41.289 0.281 17.901 {o6 2mg 10}U 40.073 1.218 18.054 {n3 c 25}P U 40.152 -1.662 18.263 {n1 2mg 10}U 38.881 -0.631 18.403 {o2 c 25}P U 38.985 -3.561 18.416 {n2 2mg 10}U 37.654 -2.525 18.662 {n4 c 11}P U 40.260 0.632 21.400 {o6 g 24}U 41.447 0.001 20.822 {n3 c 11}P U 39.586 -1.488 21.822 {n1 g 24}U 41.025 -2.059 21.562 {o2 c 11}P U 38.810 -3.555 22.160 {n2 g 24}U 40.609 -4.213 22.180 {n6 a 23}P U 42.495 1.224 23.367 {o4 u 12}U 41.121 0.763 24.182 {n3 u 12}P U 41.866 -1.311 24.493 {n1 a 23}U 43.227 -0.801 24.084 {n4 c 13}P U 41.997 2.980 26.685 {o6 g 22}U 43.062 4.336 25.698 {n3 c 13}P U 43.723 1.464 26.802 {n1 g 22}U 44.617 2.740 25.929 {o2 c 13}P U 45.333 -0.079 26.916 {n2 g 22}U 46.206 1.129 26.246 {o2 u 8}P U 45.042 5.680 28.437 {n6 a 14}U 46.558 5.690 27.961 {n3 u 8}P U 44.750 3.470 29.301 {n7 a 14}U 46.016 3.131 29.042 @labellist {dhu lbl} color= cyan master= {labels} { 16 h2U}55.699 7.273 35.679 { 17 h2U}59.075 10.841 37.981 @subgroup {antic stm} @vectorlist {antic A} color= pink master= {std bases} {c1* a 29}P 41.828 3.766 2.146 {n9 a 29}42.124 2.615 2.995 {c8 a 29}41.235 1.681 3.402 {n7 a 29}41.883 0.806 4.230 {c5 a 29}43.214 1.185 4.244 {c6 a 29}44.324 0.662 4.885 {n6 a 29}44.279 -0.558 5.356 {c6 a 29}P 44.324 0.662 4.885 {n1 a 29}45.506 1.189 4.636 {c2 a 29}45.665 2.223 3.791 {n3 a 29}44.628 2.767 3.193 {c4 a 29}43.375 2.245 3.415 {c5 a 29}43.214 1.185 4.244 {n9 a 29}P 42.124 2.615 2.995 {c4 a 29}43.375 2.245 3.415 {c5 a 29}43.214 1.185 4.244 {c4 a 29}43.375 2.245 3.415 {c5 a 29}43.214 1.185 4.244 {c4 a 29}P 43.375 2.245 3.415 {n3 a 29}44.628 2.767 3.193 {c1* a 31}P 49.617 -2.037 -1.532 {n9 a 31}4