Expression of Aurora A (but not Aurora B) is Predictive of Survival in Breast Cancer, Y. Nadler, R. L. Camp, C. Schwartz, D. L. Rimm, H. M. Kluger, and Y. Kluger, accepted for publication in Clinical Cancer Research, 2008

Inter and intra combinatorial regulation by transcription factors and MicroRNAs, Zhou Y., Ferguson J., Chang J.T., Kluger Y., BMC Genomics 2007;8(1):396

XBP1 controls diverse cell type- and condition-specific transcriptional regulatory networks,Acosta-Alvear D, Zhou Y, Blais A, Tsikitis M, Lents NH, Arias C, Lennon CJ, Kluger Y, Dynlacht BD, Mol Cell 2007 27 (1):53-66

Association between pathways in regulatory networks, Kluger, Y., Kluger, H., Tuck, D.,28th IEEE EMBS Annual International Conference, Aug 30-Sept. 3, 2006

Characterizing disease states from topological properties of transcriptional regulatory networks, Tuck, D.P., Kluger, H.M., Kluger, Y. , BMC Bioinformatics 2006, 7:236

Unraveling condition specific gene transcriptional regulatory networks in Saccharomyces cerevisiae ,Kim, H., Hu, W., Kluger, Y., BMC Bioinformatics 2006, 7:165

An initial blueprint for myogenic differentiation., Blais, A., Tsikitis, M., Acosta-Alvear, D., Sharan, R., Kluger, Y. and Dynlacht, B.D. Genes Dev. 2005 Mar 1;19(5):553-69.

A Common set of gene regulatory networks links metabolism and growth inhibition, Cam, H., Balciunaite, E., Blais, A., Spektor, A., Scarpulla, R., Young, R., Kluger, Y. and Dynlacht, B.D. Mol Cell. 2004;16(3):399-411.

A panorama of lineage-specific transcription in hematopoiesis., Kluger, Y., Lian, Z., Zhang, X., Newburger, P.E. and Weissman, S.M. Bioessays. 2004: 26:1276-87.

Lineage specificity of gene expression patterns, Y Kluger , DP Tuck, JT Chang , Y Nakayama , R Poddar, N Kohya, Z Lian, A Ben Nasr, R Halaban, DS Krause, X Zhang, PE Newburger, and SM. Weissman (2004) PNAS 101:6508:6513

Spectral biclustering of microarray data: coclustering genes and conditions,Y Kluger, R Basri, JT Chang, M Gerstein (2003) Genome Res 13: 703-16.

Relationship between gene co-expression and probe localization on microarray slides., Y Kluger, H Yu, J Qian, M Gerstein (2003) BMC Genomics 4: 49.

A Bayesian networks approach for predicting protein-protein interactions from genomic data, R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein (2003) Science 302: 449-53.

Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line. Z Lian, Y Kluger, DS Greenbaum, D Tuck, M Gerstein, N Berliner, SM Weissman, PE Newburger (2002) Blood 100: 3209-20.

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics. P Bertone, Y Kluger, N Lan, D Zheng, D Christendat, A Yee, AM Edwards, CH Arrowsmith, GT Montelione, M Gerstein (2001) Nucleic Acids Res 29: 2884-98.